Glyma06g18180 - SoyBase

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Report for Sequence Feature Glyma06g18180

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14519805
stop:	14522596
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g18180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50300	AT	Annotation by Michelle Graham. TAIR10: Xanthine/uracil permease family protein \| chr5:20466492-20468084 REVERSE LENGTH=530	SoyBase	E_val: 0	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0015853	GO-bp	Annotation by Michelle Graham. GO Biological Process: adenine transport	SoyBase	N/A	ISS
GO:0015854	GO-bp	Annotation by Michelle Graham. GO Biological Process: guanine transport	SoyBase	N/A	ISS
GO:0015931	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0005345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: purine nucleobase transmembrane transporter activity	SoyBase	N/A	ISS
PTHR11119	Panther	PURINE PERMEASE	JGI		ISS
PTHR11119:SF9	Panther	XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER	JGI		ISS
PF00860	PFAM	Permease family	JGI		ISS
UniRef100_B9RAN2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purine permease, putative n=1 Tax=Ricinus communis RepID=B9RAN2_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KC77	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KC77_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g18180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18180

Paralog	Evidence	Comments
Glyma04g36760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g173300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g18180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g18180

Limit To All Plant Sequences

>Glyma06g18180.1   sequence type=CDS   gene model=Glyma06g18180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGATCTTTGTGCAAATGGAAAAATGGAAGGGTTGAGAAGCTCATGGTCCCAAATGGAAAAGGCCTTGAACGATGTCGTTTCAAAGAGCTTTGTTGGGAGGTACTTCAAGTTGGAAGCAAGGAAGAGCTGCTTCACCAGGGAGCTTCGTGCCGCCATGGCCACTTTTCTGACCATGGTATACATCATCACCGTAAACGCCACCATCATCGCGGTCTCCGGTGGAACCTGCTCCGTCGAAGATTGCTCGTCTCCGACGAGGCCGGACTGTAAGGTGAAGCCCGACGTTGGGTACGAGAGTTGTCTTGCAAAGACGAAGAGTGACCTGGTTGTGGCCACCGCTGTTTCTGGCCTTATTGGGTCTGTTGCCATGGGCCTGTTTGCCAACCTCCCTTTGGGCCTGGCCCCTGGCATGGGGCCCAACGCATACTTCGCTTTTAACTTGGTTGGTTTTCATGGTACTGGGCCGCTCTCTTACCAGACTGCACTGGCTGTGATCTGTGTTGAGGGAATTGTTTTTCTTTTGGTCTCTGCTGTTGGGCTGAGGGGGAAGTTTGCAAAGCTCATTCCCCATTCAGTCAGGCTTGGTTGTGCTGCTGGGATTGGGCTTTTCATTGCCTTCACGGGCCTGCAGGTCGGCCTTGGTGTTGGACTTATTGGGCCTGATGCTGCTAATCTGGTTACCATAACTGCCTGTAAAGTTGTGGACCCAGAAACTGGGGCTTGCTTGGGTGGGAAACTGCAAAGCCCAAAATTCTGGTTGGGTCTTGTAGGTTTTCTAATCACAAGTTATGGGTTGATGAAAAATGTCAAAGGGAGTATGATTTATGGTATTCTTTTTGTGACTTTGGTGTCTTGGTTTAGGCACACTGAAGTCACTTATTTTCCTGACACCCCGCTTGGTGATGCAAATTATAACTATTTCAAGAAAGTGGTTGATTTTCACAACATGGATTCCACTGCTGGGGTTCTTAGCTTTAGAGGTTTCAACAAAAGGGAAGTTTGGGTGGCCTTGGCTACTTTGTTATACGTTGATGTGCTTGCCATCACTGGCACTATGTACACCATGGCAGAGATGGGAGGGTATGTGGACGAAAAAGGACATTTTGAAGGTGAATACGTGGCATACTTGGTTGATGCAGGTAGCACCATTGTGGGTTCTGCATTGGGTGTGTCAACCACAGCAACATTTGTGGAGTCATCAGCCGGTATGAGAGAAGGTGGTCGCACAGGACTAACAGCAGTTTTCATAGGATTCTTCTTCTTTCTGTCACTATTCTTCACTCCACTCTTGGCTAGTGTTCCTCCTTGGGCTATAGGACCCTCACTTGTGATGGTTGGGGTGATGATGATGAAGGTGGTGAAGGACATAGATTGGACCAACACAAAGGATGCAGTGACTGCTTTTGCCACCATGCTCCTCATGCCTCTCACTTACTCCATTGCAAATGGTATCATTGGTGGGGTTGGGCTCTACATTGCTCTTAGCCTCTATGACTATGCTGCAAGCATTGTAAATTGGTCGAGGAAGATGAGGAGAATGGTGGCCAAGGAACAAAACCAAGTTTCTGTTGACTCAGCAGTGGAAATGATATGA

Predicted protein sequences of Glyma06g18180

Limit To All Plant Sequences

>Glyma06g18180.1   sequence type=predicted peptide   gene model=Glyma06g18180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRDLCANGKMEGLRSSWSQMEKALNDVVSKSFVGRYFKLEARKSCFTRELRAAMATFLTMVYIITVNATIIAVSGGTCSVEDCSSPTRPDCKVKPDVGYESCLAKTKSDLVVATAVSGLIGSVAMGLFANLPLGLAPGMGPNAYFAFNLVGFHGTGPLSYQTALAVICVEGIVFLLVSAVGLRGKFAKLIPHSVRLGCAAGIGLFIAFTGLQVGLGVGLIGPDAANLVTITACKVVDPETGACLGGKLQSPKFWLGLVGFLITSYGLMKNVKGSMIYGILFVTLVSWFRHTEVTYFPDTPLGDANYNYFKKVVDFHNMDSTAGVLSFRGFNKREVWVALATLLYVDVLAITGTMYTMAEMGGYVDEKGHFEGEYVAYLVDAGSTIVGSALGVSTTATFVESSAGMREGGRTGLTAVFIGFFFFLSLFFTPLLASVPPWAIGPSLVMVGVMMMKVVKDIDWTNTKDAVTAFATMLLMPLTYSIANGIIGGVGLYIALSLYDYAASIVNWSRKMRRMVAKEQNQVSVDSAVEMI*

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