Glyma06g18145 - SoyBase

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Report for Sequence Feature Glyma06g18145

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14470766
stop:	14479901
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g18145

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48470	AT	Annotation by Michelle Graham. TAIR10: embryo defective 2423 \| chr3:17951689-17956754 FORWARD LENGTH=1027	SoyBase	E_val: 0	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR15830	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15830:SF5	Panther	gb def: Hypothetical protein T29H11 10	JGI		ISS
PF10193	PFAM	Telomere length regulation protein	JGI		ISS
UniRef100_F4JF17	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein embryo defective 2423 n=1 Tax=Arabidopsis thaliana RepID=F4JF17_ARATH	SoyBase	E_val: 0	ISS
UniRef100_I1KC73	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC73_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g18145

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g18145 not represented in the dataset	Glyma06g18145 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18145

Paralog	Evidence	Comments
Glyma04g36800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18145 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g172900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g18145

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g18145

Limit To All Plant Sequences

>Glyma06g18145.1   sequence type=CDS   gene model=Glyma06g18145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGGGTTTAGAGAAGAGAGAATTGGAAGGCGAAGTAGTTACCAAGGTTGTCGAAGTGGTTTCGGCTATAAAGAATGCGAAGCACGTCGATCAAGTCATTCGCGCGCTTCATTCCTTAGTCACCCTTCTTTTCCCCTTTGACTCTTCACTCCTATCAGATTTTGATTTTGATTTTGATTTTGTATCCAACGTGGCAGATAGCATTGACCAGAGTTACCGAGACCAGGTCGAAGTTCCTTCTGCAGAAAAACGACATGCTTGGTGGCGTGCGTTTTATCGAGGAGCTGCTTTTCCTACACTGGCTAGGTTTTTATTACTTGATGTTGCCTCGAACTGGTTGGGTTGTTTTCCCTTTATGGCGCAGAAGTACATTTATGATGTTTTCTTTGTTCGTGGATTGGTCACTGAGGTTCTGCAGATTTTGGTTCCTTTTCTTCAGCTGAGTGCGAGTGATGGTCTTGATGTTAATGCCGTCCTCTCTAATTCCGAAAGATTGCTTGTACTGTGCTTGCTTGAAAATAATGGGGTGCTCCAGCTGGCAAGAGAGTTTGGTGGTTCTTCTAAATTGGAAAGAGTTACAGATGTACAGATCAAGATGGATGTATCTAGGGTGGCACAGGTTGTTGCATCTATTCCTGACAAAGCAAGGATGAACTCCACGACTTCATTGTCATCACATGTGTTCTTCAAGCAGATTGTTGTCCAACTACTCTCCCTGGCAGAAGAAAGAGAGATGATTTTGCTAGACAATGTAGACATGGATGAAATGGACAAAAATGGTGCACTGTTATTTGTAGGGGAAATGTTTTCTCGCATTTGTCGCCGTGGCTCAGCTGATCTCCTAACTAGTGAATTAATACCGGAAGTTCTTAGGCTTGTCAACAGCCTCTTATCATCAAATAATGATTCAGTGACTAAGGAACTGTTTGAATCAAAACCAGAGATGGTATTTTGGTTGAAAATAATGGAATCCTTCAGTGATCCTTATACCATGGAAAGAATCTCTGAGCTGGTTTTGCATAAGTTAGCTGCTCAAGAAGCAAATGATGTTCAAGCGTATTGGGTGTTGTGGTTATTATTCCATCGAATTTTTAAGCTTCAGGCTTCTGTCAGGTCTATGTTTGTTGACAAATTCCTGCTATGGAAAGTATTCCCTATTAGCTGCCTGAAATGGATCCTTCAATTTGCTGTGCATGAATGCCCACCTGGTACCTCATTATTAGGACATAATCGCCCTGAGCTTTTGAATACTGTCCAACATCTGCTTGCAGTATGGTCTAAGAAAGAATTTGTGCAAACAGCACCTATTGAGCAACAAGCTTATATATCTGCTGCACTAGGCCTTTCTCTAGAGACAATGTATAAGGAGGAATTGGATGGGATGAAGAATGCCATGCACTTTATTCTTCAAGGAGTTAGCTGTAGGCTGGAGAGTCCTAATCATTTAGTTCGAAAAATGGCTAGCTGTGTTGCTTTGGCATTGTCTAAAATTATTGATCCAAAGAATCCTCTGTACCTTGATGATAGCTGCAGTGGGGAGACAATTGATTGGGAATTTGGATTCACTATCCCCAAGAAAGGGAATCTGGCTGCCTCAAATTGTGGAGGAAAAGGTGTTGAGGGGACAAAAATATCTACTGTGTCATGTCCGGAGAAGGACTCTGATTCCCCTTCCAATAAAGAGAAAAGTATTTGTTTAAAGGGTAAAAAGAAGTTATTGGACTTTAATGCGCTTGATCCAGATGAGATTATTGATCCAGCATCACTGAATCTTGAATCAGACGATAGCGATGAGGATGCTGACGATGGTGCTAGTGAGAATTCATATTCTTCAAGTGATTCATCTTTACGGCCATATGATTTGTCAGATGATGACTCAGATTTGAAAAGAAAAATTTCACAGTTGGCTGATGTAGTTGCAGCTCTTAGAAAATCCAATGATGCCGATGGGGTGGAAAGGGCTATTGATGTAGCTGAAAAGCTCATAAGAGCATCCCCCGATGAACTAAAACATGCAGCAAGGGATATGACCAGAACTCTTGTTCAGGTTCGGTGCTCTGATATAGCTTTAGAAGGTGCAGAAGAATCAACTGAAGACAAAAGACAAAGATCATTAGTTGCCTTAGTAGTTACCTGCCCATTTGAATCACTTGAGTCACTAAACAACCTTTTGTATTCACCTAATGTAGATATCAGTCAGCGCATTATGATACTAGATGTCATGACAGAAGCAGCTCAGGAGCTTGCGGAATCAAAAATTATGAAACCCAAACATCAGATTAGTTCCCTTATTTCAGTTGTTTCAGATACCCGACCTTGGTTCCTACCTAGCAGCACAGGAACTCCTGGAGCTGGTTCCTGGAAAGAGATCTCAGGTACTGGCTCTTTTAGGAATTGGTCAAATAGCTATGAGAGGGAACTTCCCCCAAAACCTAATCAGGTCAAGAAAGGGAAAACACGCCGGTGGAGCCTACAATCTCCCACACAACAAAACCAGATGGAGTATTCTCATAATAAGTTACCCATGTATGCTGCTGCATTCATGCTTCCTGCCATGGAGGGATATGATAAAAAAAGGCAAGGTGTTGACTTGCTTGGAAGAGATTTTATTGTCTTGGGGAAACTCATTTATATGCTTGGGGTCTGTATGAAATCTGTAGCCATGCATCCAGAAGCTTCTATGCTGGCTCCTTCCCTCCTAAATATGTTAAGATCCAGGGAGGTATGCCATCACCAGGAAGCATATGTGAGAAGAGCCGTGCTTTTTGCAGCTGCATGTGTATTGGTTGCCCTTCATCCTACTTACATTTCATCCACCTTACTCGAAGGAAATGCTGAAATTTCGACTGGCCTTGAATGGATTCGCACATGGGCACTTGACATAGCCGAGTCAGACACAGATAAAGAATGCTATACGATGGCTCTTCAAACTTCCCGAGCATGGGAGTCAGTAAGAAGTTCACTCAAGGCAGGTCCTGTTCTTCCTTCTGATGCATCCAAAGTGACCATTAAAATTCCCTACTAA

Predicted protein sequences of Glyma06g18145

Limit To All Plant Sequences

>Glyma06g18145.1   sequence type=predicted peptide   gene model=Glyma06g18145   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEGLEKRELEGEVVTKVVEVVSAIKNAKHVDQVIRALHSLVTLLFPFDSSLLSDFDFDFDFVSNVADSIDQSYRDQVEVPSAEKRHAWWRAFYRGAAFPTLARFLLLDVASNWLGCFPFMAQKYIYDVFFVRGLVTEVLQILVPFLQLSASDGLDVNAVLSNSERLLVLCLLENNGVLQLAREFGGSSKLERVTDVQIKMDVSRVAQVVASIPDKARMNSTTSLSSHVFFKQIVVQLLSLAEEREMILLDNVDMDEMDKNGALLFVGEMFSRICRRGSADLLTSELIPEVLRLVNSLLSSNNDSVTKELFESKPEMVFWLKIMESFSDPYTMERISELVLHKLAAQEANDVQAYWVLWLLFHRIFKLQASVRSMFVDKFLLWKVFPISCLKWILQFAVHECPPGTSLLGHNRPELLNTVQHLLAVWSKKEFVQTAPIEQQAYISAALGLSLETMYKEELDGMKNAMHFILQGVSCRLESPNHLVRKMASCVALALSKIIDPKNPLYLDDSCSGETIDWEFGFTIPKKGNLAASNCGGKGVEGTKISTVSCPEKDSDSPSNKEKSICLKGKKKLLDFNALDPDEIIDPASLNLESDDSDEDADDGASENSYSSSDSSLRPYDLSDDDSDLKRKISQLADVVAALRKSNDADGVERAIDVAEKLIRASPDELKHAARDMTRTLVQVRCSDIALEGAEESTEDKRQRSLVALVVTCPFESLESLNNLLYSPNVDISQRIMILDVMTEAAQELAESKIMKPKHQISSLISVVSDTRPWFLPSSTGTPGAGSWKEISGTGSFRNWSNSYERELPPKPNQVKKGKTRRWSLQSPTQQNQMEYSHNKLPMYAAAFMLPAMEGYDKKRQGVDLLGRDFIVLGKLIYMLGVCMKSVAMHPEASMLAPSLLNMLRSREVCHHQEAYVRRAVLFAAACVLVALHPTYISSTLLEGNAEISTGLEWIRTWALDIAESDTDKECYTMALQTSRAWESVRSSLKAGPVLPSDASKVTIKIPY*

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