Report for Sequence Feature Glyma06g18080
Feature Type: gene_model
Chromosome: Gm06
Start: 14392951
stop: 14401197
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g18080
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G48500 AT
Annotation by Michelle Graham. TAIR10: Nucleic acid-binding, OB-fold-like protein | chr3:17962209-17965408 FORWARD LENGTH=668
SoyBase E_val: 0 ISS
GO:0042793 GO-bp
Annotation by Michelle Graham. GO Biological Process: transcription from plastid promoter
SoyBase N/A ISS
GO:0045893 GO-bp
Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0009295 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleoid
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0009508 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastid chromosome
SoyBase N/A ISS
GO:0009570 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
UniRef100_D6QX33 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Plastid RNA-binding protein n=1 Tax=Nicotiana benthamiana RepID=D6QX33_NICBE
SoyBase E_val: 0 ISS
UniRef100_UPI000233A8D8 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233A8D8 related cluster n=1 Tax=unknown RepID=UPI000233A8D8
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g18080
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g18080
Paralog Evidence Comments
Glyma04g36900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g18080 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g172400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g18080
Coding sequences of Glyma06g18080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g18080.1 sequence type=CDS gene model=Glyma06g18080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAAGTCCTGCAAACCTCTTATCTCTTCACTTTCCCTAAACCCCTAAACCCTTCCCCTTCTCATTTCCACCACCGTCTTCCGCCACGCCCTCCGCCATTCTTCCACCGCCGCCCCCTCACCATTCCCAAATCCTTCAGCTCCGACGAGTTCCCGGTGGACGAGACCTTCCTGGAGAACTTCGGCCCCAAGGACAAAGAAACCGAGGACGAAGCCCGCCGCCGCAACTGGATCGAGCGCGGGTGGGCCCCATGGGAGGAAATCCTCACTCCGGAGGCCGATTTCGCGCGCAAGAGCCTCAACGAAGGCGAGGAGGTTCCCCTCCGCTCCCCGGAAGCCATCGAAGCGTTCAAAATGCTAAACCCTAACTACCGCAAGAAGAAAAGGGAGGAAATGGGACTCACCGAGGAAGAGTTCTTCGCGAAGCAGTTCGAGATCAAGGGCGAGATTCCGGAGCCTCTCGTGACGACGTGGGCGGGGCCGCTGGTGGTGCGCCTCGTGCCGCCACGCGATTGGCCGCCTCGTGGGTGGCGCGTGGACCAGGAGGAGCTCGCGTTCATCCGCGAGGCGCATAAGGTGCAGGCGAGGAGGGTGAGGCTGGAGGAGGTGGAGAGCGGAGTGAGGACTGACACTGATGACGTGGGCTTGGATAGGTATAGGGTGTTTCTCAAGCAGTATAAGGAATGGGTCGAGGCTAACAAGGATAGGTTGGAAGAGGAGTCTTATAAGCAAGACCAAGATTATTACCCCGGTAGAAGGAAAAGAGGGAAGGACTACAAGGAGGGCATGTACGAGCTTCCGTTCTATTATCCTGGCCAAATTTGTGTAGGGAAGGTGACAATGTTGCATCTCTATCAAGGGGCATTTGTTGACATTGGCGGGGTACATGATGGGTGGGTTCCTATAAAGAACAATGATTGGTATTGGCTTCGCCATCACATAAAAGTGGGTATGCACGTCATTGTTGAAATTACGGCAAAGCGAGATCCTTATCGCTTCCGCTTTCCTATCGAACTTCGTTTTGTTGATCCAAATATAGACCATCTAATCTTTAACAAATTTGACTTCCCACCAATATTTCATCGTGATGAAGATACTAATGAAGATGAAATACGGCGTGACTGTGGAAGACCTCCTGTTCCTAGGAAAGATCCAGGAGACAAACCAGAGGAAGAACCTCTATTGTCTAATCATCCATATGTCGAGAAGTTGTGGCAAATTAATGTAGCTGAGCAAATGATTTTGGATGATATGGCAATTAATCCTGATAAATATGAAGGCAAAAAACTGTCAGATTTGGTTGATGAAGAAGATTTTGATGAACAAAACGCTGTTGAGTATACAAAAGTTCAATATAAGAATACCACGCTACCACAAACTACTCTGAAAACAAGTGTCAAAGAGCTTGACTTAGAGGCTGCACTTGCTGAGCGTGAGCTCCATGTTAAACTAAGGAAGGAAGCAGCGGACAGAGGTGAGAAATACAAAATTACCAAACTGAGGCGCAATGTTGAGATGGATGAGTATGACTACATGCATTGGCGTAGATCATTTGAGGAAAGAGAAGCATTGACTAGAGACATCAGCTGTCGCAAAGCTCTTGGTCTGCCATTGGAAGAGCCAGGAAGATATATGGATGCTAGTTTTTTTGGTAAAGATCAATATGATCCTACAAGTCCTCTGTATCGTTATGACTACTGGGGGGAACCCAAGAATTCGGAGAAGAGCATGCAAGAGCGGATGACAGATCTCCATAACAAAAAAATCGTGGGCAAGGGCAATGTTTGGTACGAAATGTCATATGAAGATTGCATCCAGCAACAGATGGAAAGTGAAGCCCAGTCTAAGGAGCAAGAAAACGATGAAGATACAAGGCAAGGTCAAGCTGATGAAGATGAGGATGACGAGGATGATGATGATGATTTTGACTTCAGTATTCTGAGCAGTTTCGGTAGTAATTTCTCCGATCAGCCTCATGTTAATGGGACCGAGTCTTCTACAATATCAGGTGAGGGCATGTTTGAGGATTGA
Predicted protein sequences of Glyma06g18080
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g18080.1 sequence type=predicted peptide gene model=Glyma06g18080 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQVLQTSYLFTFPKPLNPSPSHFHHRLPPRPPPFFHRRPLTIPKSFSSDEFPVDETFLENFGPKDKETEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLRSPEAIEAFKMLNPNYRKKKREEMGLTEEEFFAKQFEIKGEIPEPLVTTWAGPLVVRLVPPRDWPPRGWRVDQEELAFIREAHKVQARRVRLEEVESGVRTDTDDVGLDRYRVFLKQYKEWVEANKDRLEEESYKQDQDYYPGRRKRGKDYKEGMYELPFYYPGQICVGKVTMLHLYQGAFVDIGGVHDGWVPIKNNDWYWLRHHIKVGMHVIVEITAKRDPYRFRFPIELRFVDPNIDHLIFNKFDFPPIFHRDEDTNEDEIRRDCGRPPVPRKDPGDKPEEEPLLSNHPYVEKLWQINVAEQMILDDMAINPDKYEGKKLSDLVDEEDFDEQNAVEYTKVQYKNTTLPQTTLKTSVKELDLEAALAERELHVKLRKEAADRGEKYKITKLRRNVEMDEYDYMHWRRSFEEREALTRDISCRKALGLPLEEPGRYMDASFFGKDQYDPTSPLYRYDYWGEPKNSEKSMQERMTDLHNKKIVGKGNVWYEMSYEDCIQQQMESEAQSKEQENDEDTRQGQADEDEDDEDDDDDFDFSILSSFGSNFSDQPHVNGTESSTISGEGMFED*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
