Report for Sequence Feature Glyma06g18060
Feature Type: gene_model
Chromosome: Gm06
Start: 14377541
stop: 14378748
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g18060
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G50360 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:20505433-20506308 REVERSE LENGTH=291
SoyBase E_val: 8.00E-52 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KC58 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC58_SOYBN
SoyBase E_val: 1.00E-178 ISS
UniRef100_Q9FK36 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Emb|CAB62340.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FK36_ARATH
SoyBase E_val: 4.00E-49 ISS
Expression Patterns of Glyma06g18060
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g18060
Paralog Evidence Comments
Glyma04g36920 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g18060 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g172200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g18060
Coding sequences of Glyma06g18060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g18060.1 sequence type=CDS gene model=Glyma06g18060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAGTTCCTATAAACCCACTCCTCTCCCTTCTCTGCTTCTCCAACCTCCTTCAACTCGCGCTGCATATAACATGTCCAAGATCGATCAAATAATGTTACGCTTTCGCCCTATCGCCCCCAAACCCCTCCCCTCCGCCGCCGCCCTTTCCGACGCTTTCTCCTCGGAAAACACCGGCGTCTCCAAGCGGAAGGATAACACTGGCAGCAAGCGGTGCAGTCGAGGGATCCGCCGGAGGAGAAACGCGCCTCCTCCTCCTCCTCCTCCGCCTCCGGCGGTGACTCTCCCGCTGCTACCGGAAACTCCAGATCCGAAGAAAACTACCTCCGAACTAAAGAACAAGAACGTACCGGTGTGGCTGAGCTTCGAAAACAGCTTCAAGAACCGCGGCGGTACTGCTTCTGAGAAGGTGGATCCGTGCTGGTACTCTCCGGCAGCGGGATCGGTGGTGACGGTGGAGTGCGTGATGGACAGGTGGCAGCCTCAGGAGGAGGGACTAGGGTTGGGGAGAGGAGACGTGGAACGGAAGGTTAAGCTTGAGGAGGACACGTGTCCGGGGTTTATATCGGACGGTTACGGGAGGGTGACGTGGACGAATGGGGCGTACAGGGAAATTATGGGAGAGGGAGGAGTATGGTTGGCAATGAAGGTGACCGTACCGTGTTTGTACAGAGGTTTCACGTGCAGGGTGAGGGTGCAGTACGCCTGTGGTAAAGAGAGAACGGTGCCATGTGATGTTTGGAGAATGAACAGTGGAGGCTTTGCCTGGAGATTAGACGTTAAAGCTGCTCTTAGCTTAAGCTTAGCTCTCTAA
Predicted protein sequences of Glyma06g18060
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g18060.1 sequence type=predicted peptide gene model=Glyma06g18060 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MSSYKPTPLPSLLLQPPSTRAAYNMSKIDQIMLRFRPIAPKPLPSAAALSDAFSSENTGVSKRKDNTGSKRCSRGIRRRRNAPPPPPPPPPAVTLPLLPETPDPKKTTSELKNKNVPVWLSFENSFKNRGGTASEKVDPCWYSPAAGSVVTVECVMDRWQPQEEGLGLGRGDVERKVKLEEDTCPGFISDGYGRVTWTNGAYREIMGEGGVWLAMKVTVPCLYRGFTCRVRVQYACGKERTVPCDVWRMNSGGFAWRLDVKAALSLSLAL*