Glyma06g17980 - SoyBase

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Report for Sequence Feature Glyma06g17980

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14301588
stop:	14311112
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17980

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63420	AT	Annotation by Michelle Graham. TAIR10: RNA-metabolising metallo-beta-lactamase family protein \| chr5:25400515-25405807 FORWARD LENGTH=911	SoyBase	E_val: 0	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009793	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy	SoyBase	N/A	ISS
GO:0015979	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis	SoyBase	N/A	ISS
GO:0045333	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular respiration	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
PTHR11203	Panther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR	JGI		ISS
PTHR11203:SF24	Panther	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR-RELATED	JGI		ISS
PF00753	PFAM	Metallo-beta-lactamase superfamily	JGI		ISS
PF07521	PFAM	RNA-metabolising metallo-beta-lactamase	JGI		ISS
UniRef100_G7J5I7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease J n=1 Tax=Medicago truncatula RepID=G7J5I7_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KC49	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC49_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17980

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17980

Paralog	Evidence	Comments
Glyma04g37020	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17980 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g171400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17980

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17980

Limit To All Plant Sequences

>Glyma06g17980.1   sequence type=CDS   gene model=Glyma06g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCGCTCTCACATCTCTCTCACTCTCTCTTCGCACACTCTCCCTCCGTCCCAAACCAACCACACTTTCCGCTTCACTCTCTGCAATCCCAGGAAGTAGCGATGGATCTAAAACCAAGGTACCTCCCCGCAAAAGAAGAACGGGCAGAATAGAAGGCCCTAGAAAAAGCATGGAAGATTCCGTTCAACGAAAGATGGAGCAGTTTTACGAAGGCTCCGATGGGCCTCCGCTTCGCATTCTCCCCATTGGCGGTTTGGGAGAAATTGGGATGAATTGCATGCTCGTCGGGAACAATGACCGCTATATCCTTATTGATGCCGGTGTCATGTTTCCAGATTATGACGAGCTTGGAGTTCAAAAGATTATACCTGATACCACATTTATAAGAAAGTGGAGCCACAAGATTGAAGCACTTATCATAACGCATGGTCATGAAGATCATATTGGTGCGTTGCCTTGGGTCATTCCGGCATTGGATTCCAATACACCAATTTTTGCATCTTCCTTTACAATGGAGCTTATAAAAAAACGTTTGAAGGAACATGGTATTTTTGTTCCATCTAGACTCAAAGTATTTAGAACAAGGAAGAAGTTTGTGGCTGGGCCATTTGAGATAGAACCCATCAGGGTGACCCATTCTATTCCTGATTGTTGTGGGCTAGTTCTTCGCTGTTCTGATGGTACTATTCTTCACACTGGGGACTGGAAGATTGATGAGACACCACTTGATGGGAAAGTTTTTGATCGTGAAGCTTTAGAGGAACTCTCTAAAGAAGGAGTAACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGTAGGACAATTAGTGAATCTGTTGTGGCAGATGCATTGTTGAGACATATTTCAGCATCTAAAGGAAGGGTTATTACAACCCAGTTTGCGTCAAATCTACATCGGCTTGGTAGTGTGAAAGCTGCTGCTGATTTAACTGGCAGAAAGTTGGTATTTGTTGGCATGTCTTTAAGGACTTATTTAGATGCAGCTTGGAAGGATGGAAAGGCTCCAATTGATCCATCCACTCTGGTGAAAGCAGAGGATATTGATGCTTATGCTCCAAAGGATCTGCTAATTGTAACAACAGGTTCTCAAGCAGAACCACGTGCTGCCTTGAACCTCGCATCTTATGGAAGTAGTCATGCTTTCAAACTAGCCAAGGAAGATGTTGTTTTGTATTCAGCTAAGGTTATCCCTGGTAATGAGTCTCGTGTAATGAAAATGCTAAACCGCATATCGGAGATTGGATCAACAATTGTTATGGGAAAAAATGAAGGTTTGCACACATCTGGCCATGCATATCGTGGAGAATTGGAAGAAATACTTAGAATAGTGAAGCCACAACATTTTCTTCCCATCCATGGAGAACTTTTGTTCCTGAAGGAACATGAATTACTTGGAAAATCAACTGGGATTCGGCACACTGCTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCACATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTCATTTCCCTTGGAAAAGAGAATTTACAGTTGAAATATAGTGATGGTGATAGAGCATTTGGTACATCTAGTGATCTCTTCATTGATGAAAGATTGAGAATTGCATTAGATGGCATCATTGTCATTAGCATGGAAATATTTCGCCCTAAAATTTTAGATGGTTCAGCTGAAAACACCTTGAAAGGGAAGATAAGGATTACCACGAGATGCTTATGGCTTGACAAAGGGAAGCTGATGGATGCACTCTACAAAGCAGCCCGTGCAGCTCTTTCAAGCTGCCCTGTAAAGAGTCCACTGGCTCACATCGAAAGAATTGTGTCTGAGGTATTGAGGAAGATGGTGAGGAAGTACAGTGGTAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAAACCTGCGGCCATTCTTGCTGATGAGATAAACACAAAATTGTCTGGCAAATCCCATGTGGGTCTTGGAATGTCAACATTAAGTAAAGCAGTGGATGGACATGGGAAGGGAAATCAGTCCACTGCACTGCAGGTTAAAGATGATAGTATTGATAATGCAAGTGGAGCTGAGGGTGATTTATCTGAGGAAGACAACACTGCAAGTGGGCCTGAGGGTTATTTATCTGAGGAAGACAACACTGCAAGTGGAGCCGAGGGTGATTTATCTGAGTCAGAGGATTCAGATGAATTTTGGAAACCATTCATTACATCATTACCAGTTGAGAAGTCAATCAATGCTGACAATGGTTATGTTTCACCAAAGGAGCAAAAATCCAATTTGAAGAAAGATGAGTCTGAAGACATTGATGAAGCCAAGTCAGAAGAAACATCTAATTCTGAAGCCAAGTCTTCAAAATCAGTTAAGAGAAATAAATGGAAAACTGAGGAAGTTAAGAAGCTAATTGGTATGCGTGAGGAACTAAGTGAAAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAGATTTCTCAAAAATTGTTGGCTGATGGGATCTGCAGAAGTCCTGGACAGTGCAAATCTCTGTGGACATCTTTGGTAGTCAAATATGAGGGGATCAAGAATGAGGATAGGAAGAAAAGTTGGCCATACATAGAGGACATGGAAAGGATAATGTCTGATAAAGAAGCCCCTGCAAAATGA

Predicted protein sequences of Glyma06g17980

Limit To All Plant Sequences

>Glyma06g17980.1   sequence type=predicted peptide   gene model=Glyma06g17980   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSALTSLSLSLRTLSLRPKPTTLSASLSAIPGSSDGSKTKVPPRKRRTGRIEGPRKSMEDSVQRKMEQFYEGSDGPPLRILPIGGLGEIGMNCMLVGNNDRYILIDAGVMFPDYDELGVQKIIPDTTFIRKWSHKIEALIITHGHEDHIGALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFVPSRLKVFRTRKKFVAGPFEIEPIRVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRHISASKGRVITTQFASNLHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHAFKLAKEDVVLYSAKVIPGNESRVMKMLNRISEIGSTIVMGKNEGLHTSGHAYRGELEEILRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLKYSDGDRAFGTSSDLFIDERLRIALDGIIVISMEIFRPKILDGSAENTLKGKIRITTRCLWLDKGKLMDALYKAARAALSSCPVKSPLAHIERIVSEVLRKMVRKYSGKRPEVIAIAIEKPAAILADEINTKLSGKSHVGLGMSTLSKAVDGHGKGNQSTALQVKDDSIDNASGAEGDLSEEDNTASGPEGYLSEEDNTASGAEGDLSESEDSDEFWKPFITSLPVEKSINADNGYVSPKEQKSNLKKDESEDIDEAKSEETSNSEAKSSKSVKRNKWKTEEVKKLIGMREELSERFQVVKGRMALWEEISQKLLADGICRSPGQCKSLWTSLVVKYEGIKNEDRKKSWPYIEDMERIMSDKEAPAK*

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