Glyma06g17900 - SoyBase

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Report for Sequence Feature Glyma06g17900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14243847
stop:	14246701
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF07258	PFAM	HCaRG protein	JGI		ISS
UniRef100_B9RAG7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: COMM domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RAG7_RICCO	SoyBase	E_val: 2.00E-94	ISS
UniRef100_I1KC35	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC35_SOYBN	SoyBase	E_val: 2.00E-145	ISS

Expression Patterns of Glyma06g17900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17900

Paralog	Evidence	Comments
Glyma04g37150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g170600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g17900

Limit To All Plant Sequences

>Glyma06g17900.2   sequence type=transcript   gene model=Glyma06g17900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGCTACCTTTTTTGCTTATGGGCCTTGAGTTTTAACCAGGGACCAAATCGCAATATTCACTAATTTTTCGAGTACTCCGACACGGTGGTGGTGGTGGTGTTTGATGGAGCAAACGATATGGGGTCATTTGCCGGTGCTGGTAAGGGCAAATTCAAAAGAATCTATTGAATACATTCTTCAGGCCCTTTGGAGAACTCGAAAAACTGGTCTTGGCACTACCGACCGATGCATCATCCAAGAAATGCTCCAGCTCCAAAATGAATCTGATCTCGACCCACTTCTGGTTTGCCTCCGAATGTTAATCAGGAGGTGTGTTTATGAGAACACTAGCAAGGAGGATATTCCGAAGCTGTTCCCCAGTGAGGTTCTGCCTGAATTGCAAAAACTGTTGACACTTTTGTTGCACAAGTTTCAGCGAGAGTGGCAGGAAGATGTGATGAAAGATCAGAATATTGTGCCTCGATTAAAGGCGATGACATGGAATATGGCAAATCTCGATAAAGAATCAGCAGACCCTGCAGCTGTTATCAATTTGAAGCTTCAAAATGATGGTCAATTTCACTCGGGAGAGCAAGATGTGAAGTTCAAGTTGGCTACAGATTCTATAGATATGATGCTGAAAGCCATGCACTGTATTAGAGACCAGTTTTCTACTGTGGATGAGGCACTGAATGGGCATTAGTACCAGTAAACCAATGGAGTTTCTTACAAGATACAACTAATGGAGGACATAAATGAAAGACCTAGGCAGGGGGAATCAAAACTTGATCGATCTTTGGCGGGGAGTTGTGTTATCATTCGGGCTAAAGCCTCAACTGACCAGATCATTTACTATTCTTTATTTAAAAAAGAAAAACTGTTAATAGTGTTATGCTTTTTGGATCAGAAAATTCCAGTGCAAATAAGAAACTCTTTTGGTCATGGATATGACAACCTCATATGTAACTTAATGCAAGTCAGTTTTTCACTTGATTTTCCTTTTGTTTTCTCAAGTGAACTGGTGCAAACACAAGCAAGATGCTTGCACATCCATTGTGGATTACTTTGCAGCTGTAAAACATAATGTGCATTGGATTACTGGTTTAAAGTTAATAGTTATGCTTTTAAAACTTGGAACATAAGTTGCAAATGTTC

Coding sequences of Glyma06g17900

Limit To All Plant Sequences

>Glyma06g17900.1   sequence type=CDS   gene model=Glyma06g17900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAAACGATATGGGGTCATTTGCCGGTGCTGGTAAGGGCAAATTCAAAAGAATCTATTGAATACATTCTTCAGGCCCTTTGGAGAACTCGAAAAACTGGTCTTGGCACTACCGACCGATGCATCATCCAAGAAATGCTCCAGCTCCAAAATGAATCTGATCTCGACCCACTTCTGGTTTGCCTCCGAATGTTAATCAGGAGGTGTGTTTATGAGAACACTAGCAAGGAGGATATTCCGAAGCTGTTCCCCAGTGAGGTTCTGCCTGAATTGCAAAAACTGTTGACACTTTTGTTGCACAAGTTTCAGCGAGAGTGGCAGGAAGATGTGATGAAAGATCAGAATATTGTGCCTCGATTAAAGGCGATGACATGGAATATGGCAAATCTCGATAAAGAATCAGCAGACCCTGCAGCTGTTATCAATTTGAAGTTTTCACTGCATCCTTTTCAGCTTCAAAATGATGGTCAATTTCACTCGGGAGAGCAAGATGTGAAGTTCAAGTTGGCTACAGATTCTATAGATATGATGCTGAAAGCCATGCACTGTATTAGAGACCAGTTTTCTACTGTGGATGAGGCACTGAATGGGCATTAG

>Glyma06g17900.2   sequence type=CDS   gene model=Glyma06g17900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCAAACGATATGGGGTCATTTGCCGGTGCTGGTAAGGGCAAATTCAAAAGAATCTATTGAATACATTCTTCAGGCCCTTTGGAGAACTCGAAAAACTGGTCTTGGCACTACCGACCGATGCATCATCCAAGAAATGCTCCAGCTCCAAAATGAATCTGATCTCGACCCACTTCTGGTTTGCCTCCGAATGTTAATCAGGAGGTGTGTTTATGAGAACACTAGCAAGGAGGATATTCCGAAGCTGTTCCCCAGTGAGGTTCTGCCTGAATTGCAAAAACTGTTGACACTTTTGTTGCACAAGTTTCAGCGAGAGTGGCAGGAAGATGTGATGAAAGATCAGAATATTGTGCCTCGATTAAAGGCGATGACATGGAATATGGCAAATCTCGATAAAGAATCAGCAGACCCTGCAGCTGTTATCAATTTGAAGCTTCAAAATGATGGTCAATTTCACTCGGGAGAGCAAGATGTGAAGTTCAAGTTGGCTACAGATTCTATAGATATGATGCTGAAAGCCATGCACTGTATTAGAGACCAGTTTTCTACTGTGGATGAGGCACTGAATGGGCATTAG

Predicted protein sequences of Glyma06g17900

Limit To All Plant Sequences

>Glyma06g17900.1   sequence type=predicted peptide   gene model=Glyma06g17900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQTIWGHLPVLVRANSKESIEYILQALWRTRKTGLGTTDRCIIQEMLQLQNESDLDPLLVCLRMLIRRCVYENTSKEDIPKLFPSEVLPELQKLLTLLLHKFQREWQEDVMKDQNIVPRLKAMTWNMANLDKESADPAAVINLKFSLHPFQLQNDGQFHSGEQDVKFKLATDSIDMMLKAMHCIRDQFSTVDEALNGH*

>Glyma06g17900.2   sequence type=predicted peptide   gene model=Glyma06g17900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEQTIWGHLPVLVRANSKESIEYILQALWRTRKTGLGTTDRCIIQEMLQLQNESDLDPLLVCLRMLIRRCVYENTSKEDIPKLFPSEVLPELQKLLTLLLHKFQREWQEDVMKDQNIVPRLKAMTWNMANLDKESADPAAVINLKLQNDGQFHSGEQDVKFKLATDSIDMMLKAMHCIRDQFSTVDEALNGH*

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