Glyma06g17840 - SoyBase

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Report for Sequence Feature Glyma06g17840

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14190066
stop:	14191768
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17840

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G67340	AT	Annotation by Michelle Graham. TAIR10: HCP-like superfamily protein with MYND-type zinc finger \| chr1:25230323-25231622 FORWARD LENGTH=379	SoyBase	E_val: 7.00E-140	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR12298	Panther	PCDC2 (PROGRAMMED CELL DEATH PROTEIN 2)-RELATED	JGI		ISS
PF01753	PFAM	MYND finger	JGI		ISS
PF08238	PFAM	Sel1 repeat	JGI		ISS
UniRef100_G7J3X3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box family protein n=1 Tax=Medicago truncatula RepID=G7J3X3_MEDTR	SoyBase	E_val: 3.00E-169	ISS
UniRef100_I1KC31	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KC31_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17840

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17840

Paralog	Evidence	Comments
Glyma04g37220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17840 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g170100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17840

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17840

Limit To All Plant Sequences

>Glyma06g17840.1   sequence type=CDS   gene model=Glyma06g17840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAAGGCCATGGAAGCATTCTAAGAACAAACATGATCTCTTTGAATGTCTTCCGGACGATCTCGTTGTTCTTATTCTTTCCAAGCTCAGCGCCACCGCTTCATCTCCTTCCGATTTCATCAACATCATCTTAACATGCAAGAGGCTAAACCGCTCAGGCCTGCACCGTCTTGTGTTGTCTAAAGCTGGGCCCAAAGTATTCGCCATAAAGCCGAAAAATTGGTCAGAATATGCTCACTCTTTTCTCAAACACTGCGTCAATGCCGGTAACGTGGATGCCTGTTACACTCTCGGAATGATCCGATTTTACTGTTTGAAAAACCGAGGGAGCGGGCTCTCGTTAATGGCGAAGGCGGCTATGAAGCTGCACGCGCCGGCGCTGTACTCGCTGGCAGTGATTCAGTTCAACGGTAGCGGCGGTTCAAAGCGCGATAAAGATCTACGCGCTGGCGTGGCCTTGTCGGCGCGTGCATCTTTACTCGGCCACATCGACGCGCTTCGGGAGTTAGGCCATTGCCTTCAAGACGGATACGGCGTGCGGCAGAACGTCACCGAGGGGAGAAGGCTCCTCGTGCAGGCCAACGTGCGCGAGCTCGCGTATGTCCTACGCGCCGTGGCGCCTCCTTCGCGCTGCTGCGACGAGTCCTCCTCGCTGCTGACGTGGGGCGCGCTGAGATGTCAGAGAAAAAACAACAACGCGGTGTCATCACTGGCGTGTCCGTTGCTGAGTGATTACGGTTACAGCGTGGCGCCGCCGGAAGTGCAACCGGCGAATTGGTTTCTGAGAGAGTGGTTTGAGTCAGGTAAGGGGAAATTAGAAGAAGGACTGAGGCTTTGCGCGCACATTGGGTGCGGTCGACCGGAGACGCGGCCACACGAGTTTCGCCGGTGTTCGGTTTGCGGCAAAGTGAATTACTGTTCACGTGGATGTCAGGCGCTGGATTGGAAGTTGCGGCATAAGATTGAGTGTTCGCCGGTGGAAATGTACGGTGATGGTGGTGTTGATGTGGAGAATGAGTTTGTGGTCCCAAACGATGCCGTTTGA

Predicted protein sequences of Glyma06g17840

Limit To All Plant Sequences

>Glyma06g17840.1   sequence type=predicted peptide   gene model=Glyma06g17840   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRPWKHSKNKHDLFECLPDDLVVLILSKLSATASSPSDFINIILTCKRLNRSGLHRLVLSKAGPKVFAIKPKNWSEYAHSFLKHCVNAGNVDACYTLGMIRFYCLKNRGSGLSLMAKAAMKLHAPALYSLAVIQFNGSGGSKRDKDLRAGVALSARASLLGHIDALRELGHCLQDGYGVRQNVTEGRRLLVQANVRELAYVLRAVAPPSRCCDESSSLLTWGALRCQRKNNNAVSSLACPLLSDYGYSVAPPEVQPANWFLREWFESGKGKLEEGLRLCAHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKIECSPVEMYGDGGVDVENEFVVPNDAV*

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