Glyma06g17810 - SoyBase

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Report for Sequence Feature Glyma06g17810

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14147318
stop:	14149762
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17810

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G66950	AT	Annotation by Michelle Graham. TAIR10: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein \| chr5:26733333-26735945 FORWARD LENGTH=870	SoyBase	E_val: 8.00E-22	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0030170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: pyridoxal phosphate binding	SoyBase	N/A	ISS
PTHR14237	Panther	MOLYBDOPTERIN COFACTOR SULFURASE (MOSC)	JGI		ISS
PTHR14237:SF3	Panther	gb def: hypothetical protein [arabidopsis thaliana]	JGI		ISS
UniRef100_G7J3W3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Molybdenum cofactor sulfurase n=1 Tax=Medicago truncatula RepID=G7J3W3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KC26	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC26_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17810

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17810

Paralog	Evidence	Comments
Glyma04g37260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17810 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g169800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17810

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g17810

Limit To All Plant Sequences

>Glyma06g17810.2   sequence type=transcript   gene model=Glyma06g17810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTCGAAAGCTGCACCTCAAAAAATCTTCTCCCAACGTGTTCTCTAGTTCAATTAATAGACTTTATAACAATTAATAAAACCCAGGTTCAGATTTTAATTAAGGTTCAGTTTTTGAAAACAATAATACTTGGTACATGCGAATAATTCTGGAGAATATTGCGCAAGCAAACCATGGTTAAGGCAAGACAAACATGTCACCCCTTTCATCATCATCATCATCAACTCCTATTTTAAAGCCTTGCTATATTGTCTTTTTCGGTGTAATCATCATCAGACTTTATTTGATTTTCTTAATTTCTTTCATAATAAGATTCACAGCTTCAACAAGAAATGTCATCTTTGTGAGTTTGGCTAGGCCAAGTCTTCTTTTCAAACCTTTGCCTCCTTTCTTCATCTTTTCCTTTCATTCTTCATTCATTCATTTTCTATGTGGCTTTTTTAGTCCTTGATAATACCCTCATCTTAATCACCCTAGTTCACTAGATTGGTTTGCCTTTACCCTTAATCTCTCAGAACCCACTTCTGCTAGAGAATCTTTCAATAGGACTTCTACACATATAGGCTTCTCTTTTTCCCTTTTGTTGTTGTAGTTTGCCATATATCTAAGATTTTCTGAAAAAAAACTCCCATGTTTCCATAAGTGGTGAAGACAAATATTACTATGGGGACTAACAGGCAGGAGCATGAAATTTCAGGAGGATCCGAGGTAACATATCAGGAGATGGTAGAAAATGAAGTCAAGGACACTCAGAAAGGTCCAACACGCAAATTAATAACTGAGAGCTGCAAATCAAACAGCATGGTTATAAAGAAACGACATACGTTGATTCCTCCTCACATCATAGCTGAAGCCATATCAACTATCCCTGATCTTGACATTAGATGGTCAGGTCCAATCACACCAAAAGAAATGGAATATGTTGAACAATATGTTCTAGCAAAGTATCCAGAATATTCAGGCCTCATGGAAGGAGAAGGAAATGGGATAAACTTGTCTAGCTTTATGATCTTTGAGGAGCCTAATTCAGAACCAATGATGGATGATAGGGGCAAGTCACCAAGAGAGTCTTCTACATATTTGTTTGGAAGCAATAATCTCCCTGAAATGGATAGGGCCAAAATCCAGTTAGAGCCATCAAGATTACTAGACATTCTCAACAAGAAATCCTCATTCCCTGGAAGTTTCATCTCTATCCCAGAAATCCAAGCACGCAACAAGGTTTTGAAGCATTATGGTTTGCCTGATGAAGAGTACCTTGTTCTCTTCACTCCAAGCTACAAGGATGCTATGATGTTGGTGGGAGAAAGTTACCCTTTTGTCAAGGGGAACTATTACATGACCATTCTTGACCAGGAAGAAGACTATATAAGGGAATTTGCTTCTTTTAAGGAGTCCAAGGTGATCTCAGCACCAAAGACTTGGCTGGATTTGAGGATCAGCGGGTCTCAGCTTAGCCAAAACTTCAGGAGGAGGTGTAAGATCAGCTCAAAAGGCTTGTTCTCTTATCCGGTCGATGCAAATGGAACAATGCATTGGATTTCTGAGGCTCATAGGAACAATTGGCATGTTCTACTTGATGCTTCTGCCTTGGAAGTGGGAAAGGACCGGCTGCATCTTCTGGCACTTCACCGGCCGGACTTTGTGATCTGTAGTCTTGACAACCCTCATTCCAATCCTTCAAGAGTCACCTGCCTCTTAGTGAGAAAGAAATCCTTTGAGATAAGGAGTACTGCTTGCTTATGATTTTAGAGCAATTAGCAAATTGGACAAAATTTCCATGCAGATCCTTAGGTGTTTTTTCTCCTATCAGAATTGGAATTTCCCCTAGGTAGCTTATGTCAATCTTTAATGTAAACTTTTATTATGCAAACTACTGAGGTGAACTTCCAATTCTGATTGGAGAACACTATCATAAGCACTTAATAAACTGCACCTGAGTTTTGTCCTTAAGAAATTTGATATCATGGACTCTAAGAAGCCATGAATTTTCCTGGCGTACTTTGTAGATTGAATAAATTAACACATGCATATACAAGACCACTTATTACTGGTTGGAACACATTAAGCATTGCTAATCATCTGGTTTGTTTGTAATTTGTAAGTTTTTATATTACCTTTCTCCCTTAATAAAAGACTCTTTTAACTAATCTACACCCTTTAAGAAAGATAGTTTATCTAAGTCTGGTG

Coding sequences of Glyma06g17810

Limit To All Plant Sequences

>Glyma06g17810.1   sequence type=CDS   gene model=Glyma06g17810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTAACAGGCAGGAGCATGAAATTTCAGGAGGATCCGAGGTAACATATCAGGAGATGGTAGAAAATGAAGTCAAGGACACTCAGAAAGGTCCAACACGCAAATTAATAACTGAGAGCTGCAAATCAAACAGCATGGTTATAAAGAAACGACATACGTTGATTCCTCCTCACATCATAGCTGAAGCCATATCAACTATCCCTGATCTTGACATTAGATGGTCAGGTCCAATCACACCAAAAGAAATGGAATATGTTGAACAATATGTTCTAGCAAAGTATCCAGAATATTCAGGCCTCATGGAAGGAGAAGGAAATGGGATAAACTTGTCTAGCTTTATGATCTTTGAGGAGCCTAATTCAGAACCAATGATGGATGATAGGGGCAAGTCACCAAGAGAGTCTTCTACATATTTGTTTGGAAGCAATAATCTCCCTGAAATGGATAGGGCCAAAATCCAGTTAGAGCCATCAAGATTACTAGACATTCTCAACAAGAAATCCTCATTCCCTGGAAGTTTCATCTCTATCCCAGAAATCCAAGCACGCAACAAGGTTTTGAAGCATTATGGTTTGCCTGATGAAGAGTACCTTGTTCTCTTCACTCCAAGCTACAAGGATGCTATGATGTTGGTGGGAGAAAGTTACCCTTTTGTCAAGGGGAACTATTACATGACCATTCTTGACCAGGAAGAAGACTATATAAGGGAATTTGCTTCTTTTAAGGAGTCCAAGGTGATCTCAGCACCAAAGACTTGGCTGGATTTGAGGATCAGCGGGTCTCAGCTTAGCCAAAACTTCAGGAGGAGGTGTAAGATCAGCTCAAAAGGCTTGTTCTCTTATCCGGTCGATGCAAATGGAACAATGCATTGGATTTCTGAGGCTCATAGGAACAATTGGCATGTTCTACTTGATGCTTCTGCCTTGGAAGTGGGAAAGGACCGGCTGCATCTTCTGGCACTTCACCGGCCGGACTTTGTGATCTGTAGTCTTGACAACCCTCATTCCAATCCTTCAAGAGTCACCTGCCTCTTAGTGAGAAAGAAATCCTTTGAGGTCTCAGCTACTTCATCTCAGGCAGTTGAATGA

>Glyma06g17810.2   sequence type=CDS   gene model=Glyma06g17810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGACTAACAGGCAGGAGCATGAAATTTCAGGAGGATCCGAGGTAACATATCAGGAGATGGTAGAAAATGAAGTCAAGGACACTCAGAAAGGTCCAACACGCAAATTAATAACTGAGAGCTGCAAATCAAACAGCATGGTTATAAAGAAACGACATACGTTGATTCCTCCTCACATCATAGCTGAAGCCATATCAACTATCCCTGATCTTGACATTAGATGGTCAGGTCCAATCACACCAAAAGAAATGGAATATGTTGAACAATATGTTCTAGCAAAGTATCCAGAATATTCAGGCCTCATGGAAGGAGAAGGAAATGGGATAAACTTGTCTAGCTTTATGATCTTTGAGGAGCCTAATTCAGAACCAATGATGGATGATAGGGGCAAGTCACCAAGAGAGTCTTCTACATATTTGTTTGGAAGCAATAATCTCCCTGAAATGGATAGGGCCAAAATCCAGTTAGAGCCATCAAGATTACTAGACATTCTCAACAAGAAATCCTCATTCCCTGGAAGTTTCATCTCTATCCCAGAAATCCAAGCACGCAACAAGGTTTTGAAGCATTATGGTTTGCCTGATGAAGAGTACCTTGTTCTCTTCACTCCAAGCTACAAGGATGCTATGATGTTGGTGGGAGAAAGTTACCCTTTTGTCAAGGGGAACTATTACATGACCATTCTTGACCAGGAAGAAGACTATATAAGGGAATTTGCTTCTTTTAAGGAGTCCAAGGTGATCTCAGCACCAAAGACTTGGCTGGATTTGAGGATCAGCGGGTCTCAGCTTAGCCAAAACTTCAGGAGGAGGTGTAAGATCAGCTCAAAAGGCTTGTTCTCTTATCCGGTCGATGCAAATGGAACAATGCATTGGATTTCTGAGGCTCATAGGAACAATTGGCATGTTCTACTTGATGCTTCTGCCTTGGAAGTGGGAAAGGACCGGCTGCATCTTCTGGCACTTCACCGGCCGGACTTTGTGATCTGTAGTCTTGACAACCCTCATTCCAATCCTTCAAGAGTCACCTGCCTCTTAGTGAGAAAGAAATCCTTTGAGATAAGGAGTACTGCTTGCTTATGA

Predicted protein sequences of Glyma06g17810

Limit To All Plant Sequences

>Glyma06g17810.1   sequence type=predicted peptide   gene model=Glyma06g17810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTNRQEHEISGGSEVTYQEMVENEVKDTQKGPTRKLITESCKSNSMVIKKRHTLIPPHIIAEAISTIPDLDIRWSGPITPKEMEYVEQYVLAKYPEYSGLMEGEGNGINLSSFMIFEEPNSEPMMDDRGKSPRESSTYLFGSNNLPEMDRAKIQLEPSRLLDILNKKSSFPGSFISIPEIQARNKVLKHYGLPDEEYLVLFTPSYKDAMMLVGESYPFVKGNYYMTILDQEEDYIREFASFKESKVISAPKTWLDLRISGSQLSQNFRRRCKISSKGLFSYPVDANGTMHWISEAHRNNWHVLLDASALEVGKDRLHLLALHRPDFVICSLDNPHSNPSRVTCLLVRKKSFEVSATSSQAVE*

>Glyma06g17810.2   sequence type=predicted peptide   gene model=Glyma06g17810   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTNRQEHEISGGSEVTYQEMVENEVKDTQKGPTRKLITESCKSNSMVIKKRHTLIPPHIIAEAISTIPDLDIRWSGPITPKEMEYVEQYVLAKYPEYSGLMEGEGNGINLSSFMIFEEPNSEPMMDDRGKSPRESSTYLFGSNNLPEMDRAKIQLEPSRLLDILNKKSSFPGSFISIPEIQARNKVLKHYGLPDEEYLVLFTPSYKDAMMLVGESYPFVKGNYYMTILDQEEDYIREFASFKESKVISAPKTWLDLRISGSQLSQNFRRRCKISSKGLFSYPVDANGTMHWISEAHRNNWHVLLDASALEVGKDRLHLLALHRPDFVICSLDNPHSNPSRVTCLLVRKKSFEIRSTACL*

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