SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G50570 | AT | Annotation by Michelle Graham. TAIR10: Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | chr5:20582555-20583791 REVERSE LENGTH=359 | SoyBase | E_val: 4.00E-64 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PF03110 | PFAM | SBP domain | JGI | ISS | |
| UniRef100_G7J3V1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Squamosa promoter binding protein n=1 Tax=Medicago truncatula RepID=G7J3V1_MEDTR | SoyBase | E_val: 2.00E-144 | ISS |
| UniRef100_UPI00023394F1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023394F1 related cluster n=1 Tax=unknown RepID=UPI00023394F1 | SoyBase | E_val: 0 | ISS |
|
Glyma06g17700 not represented in the dataset |
Glyma06g17700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g37391 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g168600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g17700.3 sequence type=transcript gene model=Glyma06g17700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTCTTTCTTTTTTTTTCTCTCTCAACCTACTACACCACACTGGGAAGGGGAGGAAGCCCCTATATTTGGCAAAATAAAAATATTAAATTATTAAATGGGTTGAACTTGTTGTAACTTGGAGCATATCATCCAAACCTTTTTGCCTCTTCATTGGTGTCTTCCCCCCTCTCTCTCCCTCTCTCTCTCCTCCTTCTTGAAGTATCAACTTTCAATACATTATCCACTCTACTGTGTGCACAAATCCATGACTTCATATTCTTTAAGTGGCTAACAGGCAAACGAGTGGTCGGTGAAGGAAGAAGTGAGCATCATACTGCGGCTATTCTCTTCAACTGCAAGTGCAAGCAACAACCTTACAACAAAACATAGGAACAAAGGAGGAGCAAAACAGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATCATCATGTGGGGAATTCTGGCACTGAATCAGCACTAGCCAACAAGTCCAAAGATGCTGCTGCTGCTAGTGGTGCTGCTGCTTCTGCAGGAGTTTCCAAAATGGCATCTTCACCTTCAGGGTCTTCTAAGAGAGCTAGAACCATAAGCAGCACATCACTCACAGTGTCATGCCTTGTTGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTACCATAGGCGCCATAAGGTGTGTGAACTCCATTCCAAGACCCCAGAGGTCACAATTGCTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGCGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAATTGCTACCCTTCTCAGGTCCACACGTATATGCTTCCACTGCCATGGTTAGCCCAGATTGGAGTGGTGCACTTGTGACTTCCTCTGCAGATGCTAGGTTGCACAACCACAACCACCACCACCACCAACAAGACCTTTTTCTCGGATCTTCTCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAGCAACCATCATCCCTCCACACTCAGCAACCAAAACCCGCCACCTTTCCCATCCCCTTCCATCTGCCACACGCTTCTCAGGACCCGCCCTCTATCAGAAACCTGCGGCGGAGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAACAACAGCAAGTAATAATAATAACAACTCGCTGCATGACACTATTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGGAGGGAATGGTTTGAACCAAATGGTACAGCAGCCTCCTCCTCCCTCAATGTCCCTCATGATGCAGCCCTTAGGCCTTAGCTTGCAGGATAATAACAACAACAGCTTAGAGTCTGTGGATCATTGTTCCTCCATATATAGCTTGGCTTCTGATCATCATGGATCCCACTGCAATGAAGCAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAGAGATAAGGATTAATTATTCACACTTTCTTTGTTCATTCCCCTAATGAATTCTTTCCCCCCCAAGGACTAGTCAATTAATTCTGATTTCACCCTCCCTTTATAATGAAGGCAATGCAATGCCTATGAACAATCTCATGGTATTTCTATTTGTATCTTCAGGAGAGAAAAAAAAACTCAATAATTTTACATAAGATTCATAATATATGGGAGTTGTAAAAGGAAAGTCTATATGTGTACACCTCTAATGGGAATAATGTTAGATGGTAACTGACAAAATTTAGTAATTTACATGGTAAGTTCCAATCAAGTCCAACCTCTTATTAGGTTATGGGCTTGGTAATGTTAAATCCGATT
>Glyma06g17700.2 sequence type=CDS gene model=Glyma06g17700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGTGGATCATGTGGATAAGGCAACAACCTTACAACAAAACATAGGAACAAAGGAGGAGCAAAACAGATTTGGAGTTTATAGAATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATCATCATGTGGGGAATTCTGGCACTGAATCAGCACTAGCCAACAAGTCCAAAGATGCTGCTGCTGCTAGTGGTGCTGCTGCTTCTGCAGGAGTTTCCAAAATGGCATCTTCACCTTCAGGGTCTTCTAAGAGAGCTAGAACCATAAGCAGCACATCACTCACAGTGTCATGCCTTGTTGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTACCATAGGCGCCATAAGGTGTGTGAACTCCATTCCAAGACCCCAGAGGTCACAATTGCTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGCGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAATTGCTACCCTTCTCAGGTCCACACGTATATGCTTCCACTGCCATGGTTAGCCCAGATTGGAGTGGTGCACTTGTGACTTCCTCTGCAGATGCTAGGTTGCACAACCACAACCACCACCACCACCAACAAGACCTTTTTCTCGGATCTTCTCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAGCAACCATCATCCCTCCACACTCAGCAACCAAAACCCGCCACCTTTCCCATCCCCTTCCATCTGCCACACGCTTCTCAGGACCCGCCCTCTATCAGAAACCTGCGGCGGAGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAACAACAGCAAGTAATAATAATAACAACTCGCTGCATGACACTATTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGGAGGGAATGGTTTGAACCAAATGGTACAGCAGCCTCCTCCTCCCTCAATGTCCCTCATGATGCAGCCCTTAGGCCTTAGCTTGCAGGATAATAACAACAACAGCTTAGAGTCTGTGGATCATTGTTCCTCCATATATAGCTTGGCTTCTGATCATCATGGATCCCACTGCAATGAAGCAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG >Glyma06g17700.3 sequence type=CDS gene model=Glyma06g17700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCATCATCATGTGGGGAATTCTGGCACTGAATCAGCACTAGCCAACAAGTCCAAAGATGCTGCTGCTGCTAGTGGTGCTGCTGCTTCTGCAGGAGTTTCCAAAATGGCATCTTCACCTTCAGGGTCTTCTAAGAGAGCTAGAACCATAAGCAGCACATCACTCACAGTGTCATGCCTTGTTGATGGGTGCAATTCAGATCTTAGCAATTGTAGAGATTACCATAGGCGCCATAAGGTGTGTGAACTCCATTCCAAGACCCCAGAGGTCACAATTGCTGGCCTCAAGCAAAGGTTCTGCCAACAATGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAAAGAAAAAGAAGCTGCAGAAAACGTTTAGATGGACACAATAGAAGGAGAAGAAAGCCCCAGCCAGAACCTCTCTCGCGACCTGGTAGTTTTTTGTCGAATTACCAAGGCACCCAATTGCTACCCTTCTCAGGTCCACACGTATATGCTTCCACTGCCATGGTTAGCCCAGATTGGAGTGGTGCACTTGTGACTTCCTCTGCAGATGCTAGGTTGCACAACCACAACCACCACCACCACCAACAAGACCTTTTTCTCGGATCTTCTCACAAAGAAGGGAAGCAAGTAGCATTCTTACACAGCAACCATCATCCCTCCACACTCAGCAACCAAAACCCGCCACCTTTCCCATCCCCTTCCATCTGCCACACGCTTCTCAGGACCCGCCCTCTATCAGAAACCTGCGGCGGAGGAGCGAGAAGCAAAATGTTCTGTGAAAGCTTAACAACAACAACAACAGCAAGTAATAATAATAACAACTCGCTGCATGACACTATTCCTTGTGCTCTCTCTCTTCTGTCATCATCACAGACGCACACACCAGGAGGGAATGGTTTGAACCAAATGGTACAGCAGCCTCCTCCTCCCTCAATGTCCCTCATGATGCAGCCCTTAGGCCTTAGCTTGCAGGATAATAACAACAACAGCTTAGAGTCTGTGGATCATTGTTCCTCCATATATAGCTTGGCTTCTGATCATCATGGATCCCACTGCAATGAAGCAGCCCCTCAACTGTTTCCCTTTCAATGGGAATAG
>Glyma06g17700.2 sequence type=predicted peptide gene model=Glyma06g17700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDWNLKAPSWDLVDHVDKATTLQQNIGTKEEQNRFGVYRMKGEFSVDLKLGHHHVGNSGTESALANKSKDAAAASGAAASAGVSKMASSPSGSSKRARTISSTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLSNYQGTQLLPFSGPHVYASTAMVSPDWSGALVTSSADARLHNHNHHHHQQDLFLGSSHKEGKQVAFLHSNHHPSTLSNQNPPPFPSPSICHTLLRTRPLSETCGGGARSKMFCESLTTTTTASNNNNNSLHDTIPCALSLLSSSQTHTPGGNGLNQMVQQPPPPSMSLMMQPLGLSLQDNNNNSLESVDHCSSIYSLASDHHGSHCNEAAPQLFPFQWE* >Glyma06g17700.3 sequence type=predicted peptide gene model=Glyma06g17700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKGEFSVDLKLGHHHVGNSGTESALANKSKDAAAASGAAASAGVSKMASSPSGSSKRARTISSTSLTVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIAGLKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLSRPGSFLSNYQGTQLLPFSGPHVYASTAMVSPDWSGALVTSSADARLHNHNHHHHQQDLFLGSSHKEGKQVAFLHSNHHPSTLSNQNPPPFPSPSICHTLLRTRPLSETCGGGARSKMFCESLTTTTTASNNNNNSLHDTIPCALSLLSSSQTHTPGGNGLNQMVQQPPPPSMSLMMQPLGLSLQDNNNNSLESVDHCSSIYSLASDHHGSHCNEAAPQLFPFQWE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
