SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08510 | AT | Annotation by Michelle Graham. TAIR10: fatty acyl-ACP thioesterases B | chr1:2691546-2693409 REVERSE LENGTH=412 | SoyBase | E_val: 7.00E-94 | ISS |
| GO:0006633 | GO-bp | Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0000036 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0016297 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: acyl-[acyl-carrier-protein] hydrolase activity | SoyBase | N/A | ISS |
| GO:0016790 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: thiolester hydrolase activity | SoyBase | N/A | ISS |
| PF01643 | PFAM | Acyl-ACP thioesterase | JGI | ISS | |
| UniRef100_G7J3D9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myristoyl-acyl carrier protein thioesterase n=1 Tax=Medicago truncatula RepID=G7J3D9_MEDTR | SoyBase | E_val: 2.00E-152 | ISS |
| UniRef100_UPI00023384B2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023384B2 related cluster n=1 Tax=unknown RepID=UPI00023384B2 | SoyBase | E_val: 0 | ISS |
|
Glyma06g17625 not represented in the dataset |
Glyma06g17625 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g37431 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g168000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g17625.2 sequence type=transcript gene model=Glyma06g17625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACATCAATGGTGGCACCCATCAACATGCGGCTACAATTTCGGGGAAATTGGTGCAATGCCAACAAGGGAGGGGAGTTTTTGAAGCCAAGCTTTAATTCCTCATGCAACACTAATAATACATTGAACAATAAACGAAGATTTTCATTGCTGGTGATCACTGCAAGTTCTCAATGTAGTCCTGGGGGAATGAACACAATCAAAGGAATGAAACATGTTCCATTGGTTCATCTCGCAGCAGGCAAGTTGGCAAATGAAATTAGCAGAGAACATATTGTTACGTTGTTTCGTGGAAGGTTTGTGGAGGACAGGTTTGTATATAGGCAGACTTTCTTTGTTAGGTGCTACGAAATTGGACCAGATAAAACTATCACCATGGAGACACTCATGAATTTTCTCCAGGAAACTGCTTTAAACCATGTCTCCAGCTGTGGGGGAAGTCAGAACGGTTTTGGAGCTACTCAGGAAATGGACCTTCGCAATCTCATTTGGGTTGTTACTCGTTTTCAAGTTCAAGTACAGAGATATAGCAAATGGAGGGATGAAATTGAGGTTGAAACTTGGTTTGATGTTGCCGGAAAGAATGGAACGCGAAGAGATTGGATAGTCAGGGACCATTACACCAAAGAGATTATAGCTAAAGCAACCAGCATATGGGCAATCGTGAATCAAGAAACAAGAAGATTATGCAAGATACCTGAAGAAGTTAGACAAGAACTTGTTACTTTCTACTTTAATAGGTTTGCCATCGCCAGGGAAGAAATAGATCATCAGAAGATACAAAAGCTCACTGATGACACTGCTGAGAGTTTTCGATTTGGTGTGACTCCAGGGAGGAACGACATGGATGTTAACCAGCATGTTAACAATGTAAAATACATCACATGGATCTTAGAGAGCGTGCCAAGAGAAGTATTAGAAGATTACAAAATGACAAGCATTACTTTGGAGTTTCGGCGTGAATGTACTCAATCAGATTTGTTGGAGTCATTGATAGGTCCATCCTCCAGCGTGATTGGTGCCTCTGATAATAACTCTATCAACAGAAAACCCGGCCTGCAATATATACACCTGCTTCGTCTACAAGACAATAAAGCCGAGTTGGTCCGAGCCAGAACAGATTGGCATCTTAAGCAAAACCACGAGTGAACAAGGTTATGAATTGAAATCTGTGGATGCTTTGGATGGGGCAGGTGAAATCTGTTGAGGT
>Glyma06g17625.1 sequence type=CDS gene model=Glyma06g17625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACATCAATGGTGGCACCCATCAACATGCGGCTACAATTTCGGGGAAATTGGTGCAATGCCAACAAGGGAGGGGAGTTTTTGAAGCCAAGCTTTAATTCCTCATGCAACACTAATAATACATTGAACAATAAACGAAGATTTTCATTGCTGGTGATCACTGCAAGTTCTCAATGTAGTCCTGGGGGAATGAACACAATCAAAGGAATGAAACATGTTCCATTGGTTCATCTCGCAGCAGGCAAGTTGGCAAATGAAATTAGCAGAGAACATATTGTTACGTTGTTTCGTGGAAGGTTTGTGGAGGACAGGTTTGTATATAGGCAGACTTTCTTTGTTAGGTGCTACGAAATTGGACCAGATAAAACTATCACCATGGAGACACTCATGAATTTTCTCCAGGAAACTGCTTTAAACCATGTCTCCAGCTGTGGGGGAAGTCAGAACGGTTTTGGAGCTACTCAGGAAATGGACCTTCGCAATCTCATTTGGGTTGTTACTCGTTTTCAAGTTCAAGTACAGAGATATAGCAAATGGAGGGATGAAATTGAGGTTGAAACTTGGTTTGATGTTGCCGGAAAGAATGGAACGCGAAGAGATTGGATAGTCAGGGACCATTACACCAAAGAGATTATAGCTAAAGCAACCAGCATATGGGCAATCGTGAATCAAGAAACAAGAAGATTATGCAAGATACCTGAAGAAGTTAGACAAGAACTTGTTACTTTCTACTTTAATAGGTTTGCCATCGCCAGGGAAGAAATAGATCATCAGAAGATACAAAAGCTCACTGATGACACTGCTGAGAGTTTTCGATTTGGTGTGACTCCAGGGAGGAACGACATGGATGTTAACCAGCATGTTAACAATGTAAAATACATCACATGGATCTTAGAGAGTGTGCCAAGAGAAGTATTAGAAGATTATAAACTGACAAGCATGACTTTAGAGTTTCGGCGTGAATGTACTCAATCAGATTTGTTGGAATCAATGAGTAGTTCATCATCCTCCAACGTGGTTGGTGCCTCTAATAATAACTCTGTTAATACAAAACCCAACCTGCAATATATACATCTGCTTCGTCTACAAGACAATAAAGCTGAGTTGGTCCGAGCCAGAACAGAATGGCTTCTTAAGCAAAAACCACAAGTGATACAAGGTTATATATGA >Glyma06g17625.2 sequence type=CDS gene model=Glyma06g17625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACATCAATGGTGGCACCCATCAACATGCGGCTACAATTTCGGGGAAATTGGTGCAATGCCAACAAGGGAGGGGAGTTTTTGAAGCCAAGCTTTAATTCCTCATGCAACACTAATAATACATTGAACAATAAACGAAGATTTTCATTGCTGGTGATCACTGCAAGTTCTCAATGTAGTCCTGGGGGAATGAACACAATCAAAGGAATGAAACATGTTCCATTGGTTCATCTCGCAGCAGGCAAGTTGGCAAATGAAATTAGCAGAGAACATATTGTTACGTTGTTTCGTGGAAGGTTTGTGGAGGACAGGTTTGTATATAGGCAGACTTTCTTTGTTAGGTGCTACGAAATTGGACCAGATAAAACTATCACCATGGAGACACTCATGAATTTTCTCCAGGAAACTGCTTTAAACCATGTCTCCAGCTGTGGGGGAAGTCAGAACGGTTTTGGAGCTACTCAGGAAATGGACCTTCGCAATCTCATTTGGGTTGTTACTCGTTTTCAAGTTCAAGTACAGAGATATAGCAAATGGAGGGATGAAATTGAGGTTGAAACTTGGTTTGATGTTGCCGGAAAGAATGGAACGCGAAGAGATTGGATAGTCAGGGACCATTACACCAAAGAGATTATAGCTAAAGCAACCAGCATATGGGCAATCGTGAATCAAGAAACAAGAAGATTATGCAAGATACCTGAAGAAGTTAGACAAGAACTTGTTACTTTCTACTTTAATAGGTTTGCCATCGCCAGGGAAGAAATAGATCATCAGAAGATACAAAAGCTCACTGATGACACTGCTGAGAGTTTTCGATTTGGTGTGACTCCAGGGAGGAACGACATGGATGTTAACCAGCATGTTAACAATGTAAAATACATCACATGGATCTTAGAGAGCGTGCCAAGAGAAGTATTAGAAGATTACAAAATGACAAGCATTACTTTGGAGTTTCGGCGTGAATGTACTCAATCAGATTTGTTGGAGTCATTGATAGGTCCATCCTCCAGCGTGATTGGTGCCTCTGATAATAACTCTATCAACAGAAAACCCGGCCTGCAATATATACACCTGCTTCGTCTACAAGACAATAAAGCCGAGTTGGTCCGAGCCAGAACAGATTGGCATCTTAAGCAAAACCACGAGTGA
>Glyma06g17625.1 sequence type=predicted peptide gene model=Glyma06g17625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSMVAPINMRLQFRGNWCNANKGGEFLKPSFNSSCNTNNTLNNKRRFSLLVITASSQCSPGGMNTIKGMKHVPLVHLAAGKLANEISREHIVTLFRGRFVEDRFVYRQTFFVRCYEIGPDKTITMETLMNFLQETALNHVSSCGGSQNGFGATQEMDLRNLIWVVTRFQVQVQRYSKWRDEIEVETWFDVAGKNGTRRDWIVRDHYTKEIIAKATSIWAIVNQETRRLCKIPEEVRQELVTFYFNRFAIAREEIDHQKIQKLTDDTAESFRFGVTPGRNDMDVNQHVNNVKYITWILESVPREVLEDYKLTSMTLEFRRECTQSDLLESMSSSSSSNVVGASNNNSVNTKPNLQYIHLLRLQDNKAELVRARTEWLLKQKPQVIQGYI* >Glyma06g17625.2 sequence type=predicted peptide gene model=Glyma06g17625 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTSMVAPINMRLQFRGNWCNANKGGEFLKPSFNSSCNTNNTLNNKRRFSLLVITASSQCSPGGMNTIKGMKHVPLVHLAAGKLANEISREHIVTLFRGRFVEDRFVYRQTFFVRCYEIGPDKTITMETLMNFLQETALNHVSSCGGSQNGFGATQEMDLRNLIWVVTRFQVQVQRYSKWRDEIEVETWFDVAGKNGTRRDWIVRDHYTKEIIAKATSIWAIVNQETRRLCKIPEEVRQELVTFYFNRFAIAREEIDHQKIQKLTDDTAESFRFGVTPGRNDMDVNQHVNNVKYITWILESVPREVLEDYKMTSITLEFRRECTQSDLLESLIGPSSSVIGASDNNSINRKPGLQYIHLLRLQDNKAELVRARTDWHLKQNHE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
