SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51140 | AT | Annotation by Michelle Graham. TAIR10: Pseudouridine synthase family protein | chr5:20784277-20786793 REVERSE LENGTH=395 | SoyBase | E_val: 5.00E-173 | ISS |
| GO:0000038 | GO-bp | Annotation by Michelle Graham. GO Biological Process: very long-chain fatty acid metabolic process | SoyBase | N/A | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0001522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pseudouridine synthesis | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0042335 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cuticle development | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0009982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pseudouridine synthase activity | SoyBase | N/A | ISS |
| KOG1919 | KOG | RNA pseudouridylate synthases | JGI | ISS | |
| PTHR10436 | Panther | RIBOSOMAL PSEUDOURIDINE SYNTHASE | JGI | ISS | |
| PTHR10436:SF40 | Panther | RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE-REALTED | JGI | ISS | |
| PF00849 | PFAM | RNA pseudouridylate synthase | JGI | ISS | |
| UniRef100_G7J3D1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA pseudourine synthase n=1 Tax=Medicago truncatula RepID=G7J3D1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KC01 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC01_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g17550 not represented in the dataset |
Glyma06g17550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g167100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g17550.1 sequence type=CDS gene model=Glyma06g17550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAAGAGAAAGAGAGAAGGCAAAGAGGGCATGGATAATATCGTGTGGCAGACTCCAGCGAATCCCCCGCACCCTAACGATTACGTCTTTCGAAACGGGATTCGATACGTTAGACCATACTACTTCGAATTCATCGCTCATGTTAAAAATCGGTGGGCAGGGAAAACCATTGTGGATTTGTTCGCTGAGGAATTCAAAGGTCGACCTTATGAGTATTATGTTAGTGCAGTGAAATGTGGAAGGATTCAAGTGGATGGTGAGATGGTACCGGTTTCATACATAGTTAAATCATCTCAAAAGATAAGCCATTTCTTACACAGGCATGAACCACCTGTGATGGCTTGTGAGGTTCCTGTTCTTCAAAAAGATATTGATGTGCTAACTGTTTGTAAGCCAGCATCTGTCCCTGTGCACCCATGTGGTCAATATCGTAAGAACACTGTTGTTGGCATTCTTCAAGCTGAGCATGGGCTGACCCCTCTATTTCCTGTTCATCGACTGGATCGCCTTGTCTCAGGACTTCTTATTTTGGCCAGAAATGCTGCAAAAGCTGACATTTTTAGGCAACAGATAGAAGCCGGCTTAGTCCACAAACAGTATATAGCAAAAGTAGGTGGAGAATTTCCTGAGGATGAGGTAATTGTTGATGCCAATATAGACTATAATGCAAGAGAAGGAAGGAGCACAGCAGAGGTCAGAGGCTCTGCAAAGGGGAAGGCTGCCTCTACAAAATTTACCCGGATTAGTACTAATGGAACTCAAAGTATTGTTTTATGTGAACCAATCACTGGCCGTACTCATCAGATACGCGTTCATTTACAGTATTCAGGGCACCCAATAGCCAATGACATGCTGTACATCTCAGAACAAACTGTTGATCGATCTGTTAAAGGGTTGAGTGCTGATAGATCAGCTCGCATTTCTGGTGTTTCACTGACATCAAATTTTAATGAAAAAGTGCTCAATGAATGTGAAGAAAATTCCAATGGAGACTTTGGCATCGATCCCATGTGTACAAATTGTCCAAATTTGGCACCCAAAGGATATGATAGTGATGAAGAAGGTCTGTGGCTACATTGTATTCGTTACTCTGGACCTGGATGGACGTATGAGTGTCCATATCCTGATTGGGCAAAACTTGGCTAG
>Glyma06g17550.1 sequence type=predicted peptide gene model=Glyma06g17550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MKRKREGKEGMDNIVWQTPANPPHPNDYVFRNGIRYVRPYYFEFIAHVKNRWAGKTIVDLFAEEFKGRPYEYYVSAVKCGRIQVDGEMVPVSYIVKSSQKISHFLHRHEPPVMACEVPVLQKDIDVLTVCKPASVPVHPCGQYRKNTVVGILQAEHGLTPLFPVHRLDRLVSGLLILARNAAKADIFRQQIEAGLVHKQYIAKVGGEFPEDEVIVDANIDYNAREGRSTAEVRGSAKGKAASTKFTRISTNGTQSIVLCEPITGRTHQIRVHLQYSGHPIANDMLYISEQTVDRSVKGLSADRSARISGVSLTSNFNEKVLNECEENSNGDFGIDPMCTNCPNLAPKGYDSDEEGLWLHCIRYSGPGWTYECPYPDWAKLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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