Glyma06g17520 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma06g17520): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma06g17520): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma06g17520

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13868324
stop:	13870606
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17520

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23660	AT	Annotation by Michelle Graham. TAIR10: homolog of Medicago truncatula MTN3 \| chr5:7971936-7973796 REVERSE LENGTH=285	SoyBase	E_val: 2.00E-94	ISS
GO:0015770	GO-bp	Annotation by Michelle Graham. GO Biological Process: sucrose transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0008515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sucrose transmembrane transporter activity	SoyBase	N/A	ISS
GO:0051119	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sugar transmembrane transporter activity	SoyBase	N/A	ISS
KOG1623	KOG	Multitransmembrane protein	JGI		ISS
PTHR10791	Panther	STROMAL CELL PROTEIN/NODULIN MTN3-RELATED	JGI		ISS
PF03083	PFAM	MtN3/saliva family	JGI		ISS
UniRef100_G7J3C8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein RUPTURED POLLEN GRAIN n=1 Tax=Medicago truncatula RepID=G7J3C8_MEDTR	SoyBase	E_val: 1.00E-160	ISS
UniRef100_I1KBZ7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBZ7_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma06g17520

Locus	Gene Symbol	Protein Name
	SWEET15	sucrose effluxer gene 15

Expression Patterns of Glyma06g17520

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g17520 not represented in the dataset	Glyma06g17520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17520

Paralog	Evidence	Comments
Glyma04g37530	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17520 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g166800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17520

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g17520

Limit To All Plant Sequences

>Glyma06g17520.2   sequence type=transcript   gene model=Glyma06g17520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTATCATCTCTCTATACTCGTGGCAGTTGTGTGACACAGAAATTAAGCTAGAGCTTCATAGTTTCTTCTTCTTTTCTCACCTTCCTTCTCTCCCTTCAGACAAAGGGACAAAAAATCAGTGTGTGAGAGAGAGAGAGAGAAATTCCAAAACCATGTCCCACAGTCATCTAAGTTTCGCCTTTGGGATTCTAGGTAACATTGCCTCCTTCGTGTGCTTTCTGGCACCACTGTAAGTCTAAATGTTCATTCAATCAACTAATTTTCGTTCATAAACTATACAATTAATCTTACTAATGAAAATCAAATACATATGTCCCAGACCAACATTTTATAGAGTTTGTAAGAAGAAATCAACCGAAGGGTTCCAATCAATTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATCTTTTATGCCTATGTGAAGACCGGAGAAACGCTTCTTATCACCATCAATGCATTCGGTTGCGTGATTGAGACAATTTACCTTGCCGTATTTATCACTTACTGCCCGAAGAAAGCTAGGATGTCGACATTGAGGATGATTGTTTTGTTAAATTTTGGGGGATTTTGCACAATTGTCCTCTTAACCCACCTACTAGCAAAAGGAGAAGAAGCCCGTGTCAAGCTTCTAGGATGGATTTGCGTAGTCTTTGCCACTAGTGTTTTTGCAGCACCTTTAAGCATTATTAGGGTGGTAATTCGGACGAAAAGCGTAGAGTTCCTTCCTTTCCCTCTTTCACTTCTCCTTCTGATAAGCGCAATTATGTGGCTCTTATACGGTATTTCCCTGAAGGATATCTATGTTACACTCCCGAACGTTGTGGGGTTAACATTTGGAGTCATTCAAATCGGTCTCTATGCAATGTACAGAAACAACAAACCCATAAAGGATCAGAAGCTACCAGAACACAAAGGGGATATTGTTGAGAGTGAAAACGTTATTGCTCCAACAGGGAATGGTGAAAAACAAGAAGAAGAAGTAAAGCCTCAGGGTGGAGATATAGAGATTGGTGAGAAGAAGGAAGAGAATAATAAGCAAGATCAACAACAATCTGTGGAGAATAAGAAGCTTGACCAAGTTGCTCATGACCAAACGGAACTCAACAAGAACAACATCAACAAAAACAACAACAAAACAGAGGAGAGGGTGAGTTGCGAAGTTTGATGGAATTGGAAGATCAGTGTTGTTGCCTCAATCTCTATCTCTCTATATTTTACGTGTAAAATTAGTAAAACGTGCGAAAAGAGGCAGAGACGGTGTAGATATCGTTGCCTATACTAGCTATTTCTATCTCTCTCTACAGTTATTTTAACTTATTTTGGTTCACTGTTTATGTAATTTCTGTTTTTTGTTTACCCACGCTAATTAATTGTGCCCCTAAATATAGGGAATTTCATAGAAAGAGAGTCCTATATGGTGATGTATTGTTATTATATGGACTATAGTTGTAAAAGCTTATTCCAAGCATGAAGCACCTTTCATACTCAGGCGCTGATCGAGTTTATTGCATGAAGACTGTGATTATATATGTATTTTCTTCCTTTTTATGAGTAATTATTTTTTGGTACACAAAATTTTATACTATTG

Coding sequences of Glyma06g17520

Limit To All Plant Sequences

>Glyma06g17520.1   sequence type=CDS   gene model=Glyma06g17520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCCCACAGTCATCTAAGTTTCGCCTTTGGGATTCTAGGTAACATTGCCTCCTTCGTGTGCTTTCTGGCACCACTACCAACATTTTATAGAGTTTGTAAGAAGAAATCAACCGAAGGGTTCCAATCAATTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATCTTTTATGCCTATGTGAAGACCGGAGAAACGCTTCTTATCACCATCAATGCATTCGGTTGCGTGATTGAGACAATTTACCTTGCCGTATTTATCACTTACTGCCCGAAGAAAGCTAGGATGTCGACATTGAGGATGATTGTTTTGTTAAATTTTGGGGGATTTTGCACAATTGTCCTCTTAACCCACCTACTAGCAAAAGGAGAAGAAGCCCGTGTCAAGCTTCTAGGATGGATTTGCGTAGTCTTTGCCACTAGTGTTTTTGCAGCACCTTTAAGCATTATTAGGGTGGTAATTCGGACGAAAAGCGTAGAGTTCCTTCCTTTCCCTCTTTCACTTCTCCTTCTGATAAGCGCAATTATGTGGCTCTTATACGGTATTTCCCTGAAGGATATCTATGTTACACTCCCGAACGTTGTGGGGTTAACATTTGGAGTCATTCAAATCGGTCTCTATGCAATGTACAGAAACAACAAACCCATAAAGGATCAGAAGCTACCAGAACACAAAGGGGATATTGTTGAGAGTGAAAACGTTATTGCTCCAACAGGGAATGGTGAAAAACAAGAAGAAGAAGTAAAGCCTCAGGGTGGAGATATAGAGATTGGTGAGAAGAAGGAAGAGAATAATAAGCAAGATCAACAACAATCTGTGGAGAATAAGAAGCTTGACCAAGTTGCTCATGACCAAACGGAACTCAACAAGAACAACATCAACAAAAACAACAACAAAACAGAGGAGAGGGTGAGTTGCGAAGTTTGA

>Glyma06g17520.2   sequence type=CDS   gene model=Glyma06g17520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAATCAAATACATATGTCCCAGACCAACATTTTATAGAGTTTGTAAGAAGAAATCAACCGAAGGGTTCCAATCAATTCCATATGTGGCTGCACTCTTCAGTGCAATGCTTTGGATCTTTTATGCCTATGTGAAGACCGGAGAAACGCTTCTTATCACCATCAATGCATTCGGTTGCGTGATTGAGACAATTTACCTTGCCGTATTTATCACTTACTGCCCGAAGAAAGCTAGGATGTCGACATTGAGGATGATTGTTTTGTTAAATTTTGGGGGATTTTGCACAATTGTCCTCTTAACCCACCTACTAGCAAAAGGAGAAGAAGCCCGTGTCAAGCTTCTAGGATGGATTTGCGTAGTCTTTGCCACTAGTGTTTTTGCAGCACCTTTAAGCATTATTAGGGTGGTAATTCGGACGAAAAGCGTAGAGTTCCTTCCTTTCCCTCTTTCACTTCTCCTTCTGATAAGCGCAATTATGTGGCTCTTATACGGTATTTCCCTGAAGGATATCTATGTTACACTCCCGAACGTTGTGGGGTTAACATTTGGAGTCATTCAAATCGGTCTCTATGCAATGTACAGAAACAACAAACCCATAAAGGATCAGAAGCTACCAGAACACAAAGGGGATATTGTTGAGAGTGAAAACGTTATTGCTCCAACAGGGAATGGTGAAAAACAAGAAGAAGAAGTAAAGCCTCAGGGTGGAGATATAGAGATTGGTGAGAAGAAGGAAGAGAATAATAAGCAAGATCAACAACAATCTGTGGAGAATAAGAAGCTTGACCAAGTTGCTCATGACCAAACGGAACTCAACAAGAACAACATCAACAAAAACAACAACAAAACAGAGGAGAGGGTGAGTTGCGAAGTTTGA

Predicted protein sequences of Glyma06g17520

Limit To All Plant Sequences

>Glyma06g17520.1   sequence type=predicted peptide   gene model=Glyma06g17520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSHSHLSFAFGILGNIASFVCFLAPLPTFYRVCKKKSTEGFQSIPYVAALFSAMLWIFYAYVKTGETLLITINAFGCVIETIYLAVFITYCPKKARMSTLRMIVLLNFGGFCTIVLLTHLLAKGEEARVKLLGWICVVFATSVFAAPLSIIRVVIRTKSVEFLPFPLSLLLLISAIMWLLYGISLKDIYVTLPNVVGLTFGVIQIGLYAMYRNNKPIKDQKLPEHKGDIVESENVIAPTGNGEKQEEEVKPQGGDIEIGEKKEENNKQDQQQSVENKKLDQVAHDQTELNKNNINKNNNKTEERVSCEV*

>Glyma06g17520.2   sequence type=predicted peptide   gene model=Glyma06g17520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIKYICPRPTFYRVCKKKSTEGFQSIPYVAALFSAMLWIFYAYVKTGETLLITINAFGCVIETIYLAVFITYCPKKARMSTLRMIVLLNFGGFCTIVLLTHLLAKGEEARVKLLGWICVVFATSVFAAPLSIIRVVIRTKSVEFLPFPLSLLLLISAIMWLLYGISLKDIYVTLPNVVGLTFGVIQIGLYAMYRNNKPIKDQKLPEHKGDIVESENVIAPTGNGEKQEEEVKPQGGDIEIGEKKEENNKQDQQQSVENKKLDQVAHDQTELNKNNINKNNNKTEERVSCEV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain