Glyma06g17470 - SoyBase

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Report for Sequence Feature Glyma06g17470

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13823087
stop:	13826718
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50870	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-conjugating enzyme 27 \| chr5:20699626-20700998 REVERSE LENGTH=192	SoyBase	E_val: 4.00E-109	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0043248	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome assembly	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0016881	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acid-amino acid ligase activity	SoyBase	N/A	ISS
KOG0418	KOG	Ubiquitin-protein ligase	JGI		ISS
PTHR24067	Panther	UBIQUITIN-CONJUGATING ENZYME E2	JGI		ISS
PTHR24067:SF28	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00179	PFAM	Ubiquitin-conjugating enzyme	JGI		ISS
PF00627	PFAM	UBA/TS-N domain	JGI		ISS
UniRef100_G7J3B4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carrier protein n=2 Tax=Medicago truncatula RepID=G7J3B4_MEDTR	SoyBase	E_val: 6.00E-125	ISS
UniRef100_UPI0001890C97	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001890C97 related cluster n=1 Tax=unknown RepID=UPI0001890C97	SoyBase	E_val: 2.00E-133	ISS

Expression Patterns of Glyma06g17470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g17470 not represented in the dataset	Glyma06g17470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17470

Paralog	Evidence	Comments
Glyma04g37620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g166300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g17470

Limit To All Plant Sequences

>Glyma06g17470.4   sequence type=transcript   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACGACACAACACAACACAAGCTTTATTCTTTTTCTTCGCTTCTTCTGTACAGCACCCAAGGTGAGTTATTAATTGAAGATGATAGACCTTGCGCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCAGCCCCAAAAACGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCCGTCGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGCTTCGTCTCGTGGGATTGAAGATAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCGAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACATGGCCCTTGAAAGGTTGCTGTAGATCATGGTCAAGTTTAGGAAGACGTGTCTCCATAATATGATGGAACCATATAGACAATAGGTTTTAAATTGAATAGAGTCATATAAATCTACTTGGAATATCGTATAGTCCTTTTGTTTTACTTTTCTCCTCCTTGGAAACTACAGTTCTCGACTATTTCCTGATTATTATATATATCAGCTATGAAATTAAATACCTTGTTGGCAAGGTTTCTGCTTC

>Glyma06g17470.5   sequence type=transcript   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAGCACCCAAGGTGAGTTATTAGTGAGTGAACAAGGAACACCTTATTCTTCTTCTCGTTCAAGGGGCTTTTTTGTTGTTCTCCCCGTCTGTGACTCACTGTTTTAGGGTTTGGTCAATTGGTGACAGATTGAAGATGATAGACCTTGCGCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCAGCCCCAAAAACGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCCGTCGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGCTTCGTCTCGTGGGATTGAAGATAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCGAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACATGGCCCTTGAAAGGTTGCTGTAGATCATGGTCAAGTTTAGGAAGACGTGTCTCCATAATATGATGGAACCATATAGACAATAGGTTTTAAATTGAATAGAGTCATATAAATCTACTTGGAATATCGTATAGTCCTTTTGTTTTACTTTTCTCCTCCTTGGAAACTACAGTTCTCGACTATTTCCTGATTATTATATATATCAGCTATGAAATTAAATACCTTGTTGGCAAGGTTTCTGCTTC

Coding sequences of Glyma06g17470

Limit To All Plant Sequences

>Glyma06g17470.2   sequence type=CDS   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCAGCCCCAAAAACGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCCGTCGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGCTTCGTCTCGTGGGATTGAAGATAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCGAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACATGGCCCTTGAAAGGTTGCTGTAG

>Glyma06g17470.4   sequence type=CDS   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCAGCCCCAAAAACGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCCGTCGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGCTTCGTCTCGTGGGATTGAAGATAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCGAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACATGGCCCTTGAAAGGTTGCTGTAG

>Glyma06g17470.5   sequence type=CDS   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGACCTTGCGCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCGGAGGGATCGGGCATCAAAGTCAGCCCCAAAAACGACAACCTTGTTCTCTTGATCGGCACCATTCCTGGCCCCGTCGGAACTCCATATGAAGGGGGCATTTTCCAGATTGATATCACATTGCCTGATGGGTACCCGTTTGAACCCCCCAAGATGCAGTTTAAAACCAAAGTTTGGCATCCTAATATCAGCAGCCAAAGTGGAGCTATTTGCCTGGATATCTTGAAGGACCAGTGGAGCCCAGCACTCACTCTGAAGACTGCACTTCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCCGTGGTGGCACAGCAGTATCTGAAAGACTATCAGACATTTGTTAACACTGCTCGCTACTGGACAGAAAGTTTTGCCAAGGCTTCGTCTCGTGGGATTGAAGATAAGGTACAGAAACTCGTTGAGATGGGATTTCCAGAAGCTCGAGTAAGGAGCATTTTGGAAGCTGTTGGTGGTGATGAAAACATGGCCCTTGAAAGGTTGCTGTAG

Predicted protein sequences of Glyma06g17470

Limit To All Plant Sequences

>Glyma06g17470.2   sequence type=predicted peptide   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLARVQKELVECSKDAEGSGIKVSPKNDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKASSRGIEDKVQKLVEMGFPEARVRSILEAVGGDENMALERLL*

>Glyma06g17470.4   sequence type=predicted peptide   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLARVQKELVECSKDAEGSGIKVSPKNDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKASSRGIEDKVQKLVEMGFPEARVRSILEAVGGDENMALERLL*

>Glyma06g17470.5   sequence type=predicted peptide   gene model=Glyma06g17470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIDLARVQKELVECSKDAEGSGIKVSPKNDNLVLLIGTIPGPVGTPYEGGIFQIDITLPDGYPFEPPKMQFKTKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKASSRGIEDKVQKLVEMGFPEARVRSILEAVGGDENMALERLL*

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