Glyma06g17440 - SoyBase

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Report for Sequence Feature Glyma06g17440

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13795636
stop:	13797327
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G50900	AT	Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein \| chr5:20705051-20706718 REVERSE LENGTH=555	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
PTHR23315	Panther	BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAINING	JGI		ISS
PF00514	PFAM	Armadillo/beta-catenin-like repeat	JGI		ISS
UniRef100_D7MQC3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Armadillo/beta-catenin repeat family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MQC3_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1KBZ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBZ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17440

Paralog	Evidence	Comments
Glyma04g37650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g166000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17440

Limit To All Plant Sequences

>Glyma06g17440.1   sequence type=CDS   gene model=Glyma06g17440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGATTCAACAGAAACAGATGCTATCAGCGGTTCCCTGAACCTCCTGAGTACTCTTCTCGACTCGGAGCTCCCGAGCGTGAGAAACTTCAAAGGAAAATGGTCACTCGCCCGAGTCAAACTCACCCAACTCCAAACCCACCTCACCGATTTCTCCGCCGAGTTCCCAAACGCCTCCACATCGAACCCCCTCTCCCTCCACCTCCTCCACTCAATCTCCCAAACCCTCAACGACGCCGTTTCGCTCTCCAAAACATGCCAACCCGAAACCCTCCCAAACGGAAAACTCAAAACCCAAAGCGACCTGGATTCCCTCCTCGCCACCCTCGACCGCCACGTCAGCGACTGCGACATCCTCTTCCGCAGCGGCCTTCTCCTCGAAAATAGCGTCTCCGTTTCCGTCTCTAAACGCGAAGCCATCCGCTCCGAATCGCGTAGCCTAATAACCCGTCTCCAAATCGGGTCACCCGAATCCAAAGCCTCCGCGATGGACTCCTTATTGGGGCTTCTCCAAGAAGACGACAAAAACGTGACCATCGCGGTGGCGCAGGGAGTCGTTCCCGTGCTCGTGCGTCTACTCGATTCCTCCCCATCCGAAACGAAAGAGAAAACCGTCGCCGCCATCTCAAAAATCTCCACCGTGGAAAGCGCGAAAAGCGTTCTTCTCGCTGAGGGTTTACTCCTTCTGAACCACTTGCTTAGGGTTTTGGATTCTGGAAGTGGCTTCGCTATTGAGAAAGCATGCATCGCGCTTCGGGCGTTGAGTTTGACGAAGGAGAACGCTAGGGCGATTGGCTCGCGCGGCGGAATCTCGTCGCTGCTCGAGATCTGCCAGGCTGGCACCCCCGGCGCACAGGCTTCCGCCGCCGCTGTGCTGCGAAACCTCGCCGCGTTTGAGGAAATTAGGGTTAATTTTGTTGAGGAGAACGCGGTGGTGGTTCTGATTGCCTTGGCTTCCTCCGGGACAGCGGTGGCGCGTGAGAATGCGGTCGGTTGTTTGTCGAATTTGACTAATTCGGGTTCGTCGGAGGAGGCCGATGGTTTGTTGAATTTGAGGGTTATGGTGGTGAAAGAAGGTGGAGTTGAGTGTTTGAAGAATTACTGGGATTCAGGGAATCAAATTCAGAGTCTTGAAGTGGCTGTGGAGATGCTGCGGCATTTGGCTGAAAGTGATCCAATTGGTGAGGTTCTTGTGGGTGAAGGTTTTGTTCAGAGGCTTGTTGGGGTGCTGAATTGTGAGGTTCTGGCTGTTCGGATTGCGGCGGTGAGGGCGGTTTACGCCTTAGGATTGAACAGCGGGAGGGCGAGGAAGGAGATGGGGGAATTGGGGTCTTCTGCGATGGCATTGTCAGTGCTGCTGATGCACCCGGCGAATCGAAGAATTTTCCGCAAGGACGAAAGAGGAGTTGTGAGTGCTGTTCATTTGTTGAACCCTTCGTTGCAGGGGTTGGATAAGAAGTACCCTGTTTCGTTACTCGCTTTGCTTGTTCATTCCAAGAGTTGCAGGAAGCAAATGGTGGCTGCTGGAGCTTGTGTACATACGCAGAAGCTTGTGGAAATGGATGTTCCCGGGTCCAAGAAACTCTTGGAGAGTCTTGGCCGTGGTAAGATTTGGGGTGTTTTTGCTAGACCCTAG

Predicted protein sequences of Glyma06g17440

Limit To All Plant Sequences

>Glyma06g17440.1   sequence type=predicted peptide   gene model=Glyma06g17440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDSTETDAISGSLNLLSTLLDSELPSVRNFKGKWSLARVKLTQLQTHLTDFSAEFPNASTSNPLSLHLLHSISQTLNDAVSLSKTCQPETLPNGKLKTQSDLDSLLATLDRHVSDCDILFRSGLLLENSVSVSVSKREAIRSESRSLITRLQIGSPESKASAMDSLLGLLQEDDKNVTIAVAQGVVPVLVRLLDSSPSETKEKTVAAISKISTVESAKSVLLAEGLLLLNHLLRVLDSGSGFAIEKACIALRALSLTKENARAIGSRGGISSLLEICQAGTPGAQASAAAVLRNLAAFEEIRVNFVEENAVVVLIALASSGTAVARENAVGCLSNLTNSGSSEEADGLLNLRVMVVKEGGVECLKNYWDSGNQIQSLEVAVEMLRHLAESDPIGEVLVGEGFVQRLVGVLNCEVLAVRIAAVRAVYALGLNSGRARKEMGELGSSAMALSVLLMHPANRRIFRKDERGVVSAVHLLNPSLQGLDKKYPVSLLALLVHSKSCRKQMVAAGACVHTQKLVEMDVPGSKKLLESLGRGKIWGVFARP*

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