Glyma06g17371 - SoyBase

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Report for Sequence Feature Glyma06g17371

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13676137
stop:	13685328
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17371

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23720	AT	Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase family protein \| chr5:7998816-8002594 FORWARD LENGTH=845	SoyBase	E_val: 0	ISS
GO:0000188	GO-bp	Annotation by Michelle Graham. GO Biological Process: inactivation of MAPK activity	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0010119	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement	SoyBase	N/A	ISS
GO:0010468	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of gene expression	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0043405	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0043407	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity	SoyBase	N/A	ISS
GO:0043622	GO-bp	Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004721	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity	SoyBase	N/A	ISS
GO:0004725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
GO:0033549	GO-mf	Annotation by Michelle Graham. GO Molecular Function: MAP kinase phosphatase activity	SoyBase	N/A	ISS
KOG1718	KOG	Dual specificity phosphatase	JGI		ISS
PTHR10159	Panther	DUAL SPECIFICITY PROTEIN PHOSPHATASE	JGI		ISS
PTHR10159:SF129	Panther	MAP KINASE PHOSPHATASE	JGI		ISS
PF00782	PFAM	Dual specificity phosphatase, catalytic domain	JGI		ISS
PF07727	PFAM	Reverse transcriptase (RNA-dependent DNA polymerase)	JGI		ISS
PF09192	PFAM	Actin-fragmin kinase, catalytic	JGI		ISS
UniRef100_G7LIS6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity protein phosphatase n=1 Tax=Medicago truncatula RepID=G7LIS6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JXP8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXP8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17371

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g17371 not represented in the dataset	Glyma06g17371 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17371

Paralog	Evidence	Comments
Glyma04g37730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17371 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g165300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17371

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17371

Limit To All Plant Sequences

>Glyma06g17371.1   sequence type=CDS   gene model=Glyma06g17371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAAGACAAAGAGCAGCTAAAGCAGGATCCCACGGCAATCACCACTTCCTCACAAAACCAAAACCAAGCCCAGGAATTTCAGGGTAAAGGTGAAGTGGAAAAGGAGGAAGAGGCTGAGGCCCCTTTGACTCTAAGCGTTACTTCCAAGGTTTTGAACATGTTGGGAGACATCACAGCAGGGCCTGCATCTATGTTCGCGCAATGGCTCCAATTAGTTCGTAAACGCACTTCTAACAGTCGCACTTCTGGCTTCCCTCACCGTTCTTCCAGCATGCCTTCTAGCCCGGGAGAATCTATTGAGGACGCAAAGAATGATCAGCAAACAGAGTTTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAGTCAAGCTCATTTTCTTGGGACAGACTCTCTTCACTTCACCACACCGAACATACTAGCAGCAATGAACATTCTGAGGATGAAATAAACCGCGCTCTTGAGGTAACAGTAAATTCTGGAGGGGTGGTCTTCTTTGCCTTTTTCAATGGTTTTGGGAACGACGATGCCTCTCCAAAAGAAGCAGCCGCTGTTATAAAGATATCATCTTCAAGAATGGCAACGCAATCCGAACGTCTTGGTTACGAATTTGCCAAACAGTTGGGAGTCCAAACTCCGCAGGCTAGAGTCATCCACAATACAAGTTTAGAGTGGACCCAAATAAAGGAAGCTACAGAAAAAGCAAGGGATGTTGCAAGTTCTGCAGGCGATGAAGTTGATGAAATGACATGCACAGTATTCGTGAAAGAGTTAGGCCATCTCACTTATTTCTTGGGTTTAGAGGTGCATTATCATCACCAAGGCATTTCTCTATGTCAACACAAGTATATTCAAGACTTGGTCCAGCTAGCTGGACTCCCAAATGCCACCCCTGTTGACACTCCCATGGAAGTTAATGTTAAATATCGGAGAGATGAAGGTGAACTTCTTGATGATCCCACTCACTATCGCAAGCTCGTGGGAAGTCTCATCTATCTAACTATCACTCGCCTAGATATTTCTTTTGTTGTCCACACCGTGAGTAAGTTCATGCAATCTCCGAGGCATTTGCATCTTTTAGCAGTAAAACAGATCATTAGATACCTCCTTGGCACCCCAAAGCATGGTCTGTTTTTTCCTGCTGATTCCTCCGTACAACTCCAAGCATACAGTGATGCTGATTGGGCTGAACTTTTGGAAGCACTTGAACTTAGCCGATGTCTCATGTTTATGAGTTATGTGCACAGTTCACCCTTGCTTGAAAGCACTACAGCATTTGAATCACAGGAACTTGCAGAACGAACATCAGCTGCCCTTGACAGGATAATGTTGTTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGGCAGCTTAGATGGCGTGGGAACTCCGCAAATTTGTTATTGGCTGAAAAGATAATCTCAAGTACAGATACAGCAGGAGAAACTCCTGATTCTGCAATGAACTCATATGGACAGAGAGCAAACAGGGCACTTCAAAAAGAAAAAAGTTTTAAAAGTCAAACGTCATTAGAATCAATGCTTACCAACTTTATTGTGGCCATTGATTCTGGCGTTCCTCGTCGACCCCCTGTTGGAAAACGAACAGATGATCAGGTTAGTTATCCTAAGTTGGTCGAGTTACTACTCAATAGCTCAGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGACTAGGATTTCCTCATGAAGACACAAATACAATCACTGATGTCCATCATACTACTGATGTAACATCAGTCGTTCATGTGTTCCGTAGTGGTTTTCGTGCTGCTCTCAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTGCATCAAAAACTAGATAATTTGTTAAGATCATTTATGAATGCTATAGGCAAAATATCATCAGGGGAGTCTGAAAAAGAGGATGCAGTGGTTCCTGGCTCAGCTTCACCCACTGTTTTTGGTAGTTGTCCCTCTCCATCTAGTAAAGAAAGGCTTTCTAATGATATCCATCAAGATTGTAGTGATTCAGAATCTCAGAGAACTGCTCCAAGGGCATCATCATCTTCAGGCAAAAGAGATTGTTGTGACTCTGCTTCTTCCGTGTCAAGAGAAGGTTGGCATGGAAAACACTCTAAAGGAAGTGCGGATTCACTTCGTGCTCTCCGCTTGACAACCAAGCTCCGTGACTTACATAAACTTGCCAAGGTTGATTCAGAATCCCATAAAGAATTTGAACACTGGAATGAAATGCTTAAAAATGATGCGGTCAAGTTATGTTTGGAGCATAATTTTAACACAGGATTTTTTGAGGGTTGTGAGAACAACACTGTTGTTGATGCATATGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCCTGCATATCTGAGGCTGCGAATACAGAGAAACCATCTGCGGTTACAAATAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTACATACACACTGCAACGCTTGGGAATCACGCATATTTTATGTTTGTGTACAAATGAAATTGGCCAATCAGATTCTCAATTTCCTGATCTATTCATGTACACAAATTTCTCTGTGTGTGACACTGAAGATTCTAACATCAGCAGCATATTTGAAGAGGCCTGTGATTTTATAGACTATGTTGAACAAGCTGGTCGGAGTATTTTAGTCCATTGCTTCGAGGGGAAAAGCCGAAGTGCCACTTTAGTCCTTGCTTACCTAATGCTTAGAAAGAAATTCACTTTGTTAGAAGCATGGAGTGCTCTAAAACGAGTTCATCGCCGATCTCAGCCCAACGATGGTTTTGCAAAGATCTTACTTGAGCTGGACCTGAAACTGCATGGGAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAATGATGAAAGTTTGCCCCATCTGTGGCAAGAATGCTGGACTAAGCAGTAGCTCTCTTAAACTCCATCTTCAGAAATCACACAAAAGGCTGTCATCAGGAAGCGTAGATAGTGCCATGACAATGGAGATTCAGAAGGCATTAACAACTTTGAAGATTAGCCGTGGTGGGAGTGTCAGTCCCAAACCAAGGAAGTCTCATTCAACGATAGAAGCATAG

Predicted protein sequences of Glyma06g17371

Limit To All Plant Sequences

>Glyma06g17371.1   sequence type=predicted peptide   gene model=Glyma06g17371   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKDKEQLKQDPTAITTSSQNQNQAQEFQGKGEVEKEEEAEAPLTLSVTSKVLNMLGDITAGPASMFAQWLQLVRKRTSNSRTSGFPHRSSSMPSSPGESIEDAKNDQQTEFSLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSEDEINRALEVTVNSGGVVFFAFFNGFGNDDASPKEAAAVIKISSSRMATQSERLGYEFAKQLGVQTPQARVIHNTSLEWTQIKEATEKARDVASSAGDEVDEMTCTVFVKELGHLTYFLGLEVHYHHQGISLCQHKYIQDLVQLAGLPNATPVDTPMEVNVKYRRDEGELLDDPTHYRKLVGSLIYLTITRLDISFVVHTVSKFMQSPRHLHLLAVKQIIRYLLGTPKHGLFFPADSSVQLQAYSDADWAELLEALELSRCLMFMSYVHSSPLLESTTAFESQELAERTSAALDRIMLLDLVIRNEDRLPCRQLRWRGNSANLLLAEKIISSTDTAGETPDSAMNSYGQRANRALQKEKSFKSQTSLESMLTNFIVAIDSGVPRRPPVGKRTDDQVSYPKLVELLLNSSEFSSNLLHDITGGRLGFPHEDTNTITDVHHTTDVTSVVHVFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFMNAIGKISSGESEKEDAVVPGSASPTVFGSCPSPSSKERLSNDIHQDCSDSESQRTAPRASSSSGKRDCCDSASSVSREGWHGKHSKGSADSLRALRLTTKLRDLHKLAKVDSESHKEFEHWNEMLKNDAVKLCLEHNFNTGFFEGCENNTVVDAYELKVRLEHILERIACISEAANTEKPSAVTNSLFIGGALAARSTYTLQRLGITHILCLCTNEIGQSDSQFPDLFMYTNFSVCDTEDSNISSIFEEACDFIDYVEQAGRSILVHCFEGKSRSATLVLAYLMLRKKFTLLEAWSALKRVHRRSQPNDGFAKILLELDLKLHGKVSMEWQQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKALTTLKISRGGSVSPKPRKSHSTIEA*

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