SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23720 | AT | Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase family protein | chr5:7998816-8002594 FORWARD LENGTH=845 | SoyBase | E_val: 0 | ISS |
| GO:0000188 | GO-bp | Annotation by Michelle Graham. GO Biological Process: inactivation of MAPK activity | SoyBase | N/A | ISS |
| GO:0006470 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0010119 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement | SoyBase | N/A | ISS |
| GO:0010468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of gene expression | SoyBase | N/A | ISS |
| GO:0016311 | GO-bp | Annotation by Michelle Graham. GO Biological Process: dephosphorylation | SoyBase | N/A | ISS |
| GO:0043405 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of MAP kinase activity | SoyBase | N/A | ISS |
| GO:0043407 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of MAP kinase activity | SoyBase | N/A | ISS |
| GO:0043622 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cortical microtubule organization | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0004721 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphoprotein phosphatase activity | SoyBase | N/A | ISS |
| GO:0004725 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine phosphatase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008138 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0016791 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphatase activity | SoyBase | N/A | ISS |
| GO:0033549 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: MAP kinase phosphatase activity | SoyBase | N/A | ISS |
| KOG1718 | KOG | Dual specificity phosphatase | JGI | ISS | |
| PTHR10159 | Panther | DUAL SPECIFICITY PROTEIN PHOSPHATASE | JGI | ISS | |
| PTHR10159:SF129 | Panther | MAP KINASE PHOSPHATASE | JGI | ISS | |
| PF00782 | PFAM | Dual specificity phosphatase, catalytic domain | JGI | ISS | |
| PF07727 | PFAM | Reverse transcriptase (RNA-dependent DNA polymerase) | JGI | ISS | |
| PF09192 | PFAM | Actin-fragmin kinase, catalytic | JGI | ISS | |
| UniRef100_G7LIS6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dual specificity protein phosphatase n=1 Tax=Medicago truncatula RepID=G7LIS6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1JXP8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXP8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g17371 not represented in the dataset |
Glyma06g17371 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g37730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g165300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g17371.1 sequence type=CDS gene model=Glyma06g17371 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAAAGACAAAGAGCAGCTAAAGCAGGATCCCACGGCAATCACCACTTCCTCACAAAACCAAAACCAAGCCCAGGAATTTCAGGGTAAAGGTGAAGTGGAAAAGGAGGAAGAGGCTGAGGCCCCTTTGACTCTAAGCGTTACTTCCAAGGTTTTGAACATGTTGGGAGACATCACAGCAGGGCCTGCATCTATGTTCGCGCAATGGCTCCAATTAGTTCGTAAACGCACTTCTAACAGTCGCACTTCTGGCTTCCCTCACCGTTCTTCCAGCATGCCTTCTAGCCCGGGAGAATCTATTGAGGACGCAAAGAATGATCAGCAAACAGAGTTTAGTTTGTGGGAGAGGCTTGGTAAAGCTGAAATGTTGGACATTGAGTCAAGCTCATTTTCTTGGGACAGACTCTCTTCACTTCACCACACCGAACATACTAGCAGCAATGAACATTCTGAGGATGAAATAAACCGCGCTCTTGAGGTAACAGTAAATTCTGGAGGGGTGGTCTTCTTTGCCTTTTTCAATGGTTTTGGGAACGACGATGCCTCTCCAAAAGAAGCAGCCGCTGTTATAAAGATATCATCTTCAAGAATGGCAACGCAATCCGAACGTCTTGGTTACGAATTTGCCAAACAGTTGGGAGTCCAAACTCCGCAGGCTAGAGTCATCCACAATACAAGTTTAGAGTGGACCCAAATAAAGGAAGCTACAGAAAAAGCAAGGGATGTTGCAAGTTCTGCAGGCGATGAAGTTGATGAAATGACATGCACAGTATTCGTGAAAGAGTTAGGCCATCTCACTTATTTCTTGGGTTTAGAGGTGCATTATCATCACCAAGGCATTTCTCTATGTCAACACAAGTATATTCAAGACTTGGTCCAGCTAGCTGGACTCCCAAATGCCACCCCTGTTGACACTCCCATGGAAGTTAATGTTAAATATCGGAGAGATGAAGGTGAACTTCTTGATGATCCCACTCACTATCGCAAGCTCGTGGGAAGTCTCATCTATCTAACTATCACTCGCCTAGATATTTCTTTTGTTGTCCACACCGTGAGTAAGTTCATGCAATCTCCGAGGCATTTGCATCTTTTAGCAGTAAAACAGATCATTAGATACCTCCTTGGCACCCCAAAGCATGGTCTGTTTTTTCCTGCTGATTCCTCCGTACAACTCCAAGCATACAGTGATGCTGATTGGGCTGAACTTTTGGAAGCACTTGAACTTAGCCGATGTCTCATGTTTATGAGTTATGTGCACAGTTCACCCTTGCTTGAAAGCACTACAGCATTTGAATCACAGGAACTTGCAGAACGAACATCAGCTGCCCTTGACAGGATAATGTTGTTGGACCTTGTCATCAGAAATGAAGATAGGCTCCCTTGCCGGCAGCTTAGATGGCGTGGGAACTCCGCAAATTTGTTATTGGCTGAAAAGATAATCTCAAGTACAGATACAGCAGGAGAAACTCCTGATTCTGCAATGAACTCATATGGACAGAGAGCAAACAGGGCACTTCAAAAAGAAAAAAGTTTTAAAAGTCAAACGTCATTAGAATCAATGCTTACCAACTTTATTGTGGCCATTGATTCTGGCGTTCCTCGTCGACCCCCTGTTGGAAAACGAACAGATGATCAGGTTAGTTATCCTAAGTTGGTCGAGTTACTACTCAATAGCTCAGAGTTTTCCTCTAACCTGTTACATGATATAACTGGAGGGAGACTAGGATTTCCTCATGAAGACACAAATACAATCACTGATGTCCATCATACTACTGATGTAACATCAGTCGTTCATGTGTTCCGTAGTGGTTTTCGTGCTGCTCTCAGGGATCTGCAGGGATTCCATATATTCCTACTCACACTGCATCAAAAACTAGATAATTTGTTAAGATCATTTATGAATGCTATAGGCAAAATATCATCAGGGGAGTCTGAAAAAGAGGATGCAGTGGTTCCTGGCTCAGCTTCACCCACTGTTTTTGGTAGTTGTCCCTCTCCATCTAGTAAAGAAAGGCTTTCTAATGATATCCATCAAGATTGTAGTGATTCAGAATCTCAGAGAACTGCTCCAAGGGCATCATCATCTTCAGGCAAAAGAGATTGTTGTGACTCTGCTTCTTCCGTGTCAAGAGAAGGTTGGCATGGAAAACACTCTAAAGGAAGTGCGGATTCACTTCGTGCTCTCCGCTTGACAACCAAGCTCCGTGACTTACATAAACTTGCCAAGGTTGATTCAGAATCCCATAAAGAATTTGAACACTGGAATGAAATGCTTAAAAATGATGCGGTCAAGTTATGTTTGGAGCATAATTTTAACACAGGATTTTTTGAGGGTTGTGAGAACAACACTGTTGTTGATGCATATGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCCTGCATATCTGAGGCTGCGAATACAGAGAAACCATCTGCGGTTACAAATAGTCTGTTCATTGGTGGAGCACTGGCTGCAAGATCTACATACACACTGCAACGCTTGGGAATCACGCATATTTTATGTTTGTGTACAAATGAAATTGGCCAATCAGATTCTCAATTTCCTGATCTATTCATGTACACAAATTTCTCTGTGTGTGACACTGAAGATTCTAACATCAGCAGCATATTTGAAGAGGCCTGTGATTTTATAGACTATGTTGAACAAGCTGGTCGGAGTATTTTAGTCCATTGCTTCGAGGGGAAAAGCCGAAGTGCCACTTTAGTCCTTGCTTACCTAATGCTTAGAAAGAAATTCACTTTGTTAGAAGCATGGAGTGCTCTAAAACGAGTTCATCGCCGATCTCAGCCCAACGATGGTTTTGCAAAGATCTTACTTGAGCTGGACCTGAAACTGCATGGGAAGGTTTCAATGGAGTGGCAGCAACGGAAACCAATGATGAAAGTTTGCCCCATCTGTGGCAAGAATGCTGGACTAAGCAGTAGCTCTCTTAAACTCCATCTTCAGAAATCACACAAAAGGCTGTCATCAGGAAGCGTAGATAGTGCCATGACAATGGAGATTCAGAAGGCATTAACAACTTTGAAGATTAGCCGTGGTGGGAGTGTCAGTCCCAAACCAAGGAAGTCTCATTCAACGATAGAAGCATAG
>Glyma06g17371.1 sequence type=predicted peptide gene model=Glyma06g17371 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKDKEQLKQDPTAITTSSQNQNQAQEFQGKGEVEKEEEAEAPLTLSVTSKVLNMLGDITAGPASMFAQWLQLVRKRTSNSRTSGFPHRSSSMPSSPGESIEDAKNDQQTEFSLWERLGKAEMLDIESSSFSWDRLSSLHHTEHTSSNEHSEDEINRALEVTVNSGGVVFFAFFNGFGNDDASPKEAAAVIKISSSRMATQSERLGYEFAKQLGVQTPQARVIHNTSLEWTQIKEATEKARDVASSAGDEVDEMTCTVFVKELGHLTYFLGLEVHYHHQGISLCQHKYIQDLVQLAGLPNATPVDTPMEVNVKYRRDEGELLDDPTHYRKLVGSLIYLTITRLDISFVVHTVSKFMQSPRHLHLLAVKQIIRYLLGTPKHGLFFPADSSVQLQAYSDADWAELLEALELSRCLMFMSYVHSSPLLESTTAFESQELAERTSAALDRIMLLDLVIRNEDRLPCRQLRWRGNSANLLLAEKIISSTDTAGETPDSAMNSYGQRANRALQKEKSFKSQTSLESMLTNFIVAIDSGVPRRPPVGKRTDDQVSYPKLVELLLNSSEFSSNLLHDITGGRLGFPHEDTNTITDVHHTTDVTSVVHVFRSGFRAALRDLQGFHIFLLTLHQKLDNLLRSFMNAIGKISSGESEKEDAVVPGSASPTVFGSCPSPSSKERLSNDIHQDCSDSESQRTAPRASSSSGKRDCCDSASSVSREGWHGKHSKGSADSLRALRLTTKLRDLHKLAKVDSESHKEFEHWNEMLKNDAVKLCLEHNFNTGFFEGCENNTVVDAYELKVRLEHILERIACISEAANTEKPSAVTNSLFIGGALAARSTYTLQRLGITHILCLCTNEIGQSDSQFPDLFMYTNFSVCDTEDSNISSIFEEACDFIDYVEQAGRSILVHCFEGKSRSATLVLAYLMLRKKFTLLEAWSALKRVHRRSQPNDGFAKILLELDLKLHGKVSMEWQQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHKRLSSGSVDSAMTMEIQKALTTLKISRGGSVSPKPRKSHSTIEA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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