SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G26744 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr3:9832953-9834790 REVERSE LENGTH=494 | SoyBase | E_val: 4.00E-126 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009409 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cold | SoyBase | N/A | ISS |
| GO:0009410 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009845 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed germination | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0009933 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem structural organization | SoyBase | N/A | ISS |
| GO:0010162 | GO-bp | Annotation by Michelle Graham. GO Biological Process: seed dormancy process | SoyBase | N/A | ISS |
| GO:0010182 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sugar mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0019915 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid storage | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of cellular process | SoyBase | N/A | ISS |
| GO:0050826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to freezing | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| PTHR23042 | Panther | CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS | JGI | ISS | |
| PTHR23042:SF24 | Panther | AMS (ABORTED MICROSPORES), DNA BINDING / TRANSCRIP | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_B8XJY8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Inducer of CBF expression 4 n=1 Tax=Glycine max RepID=B8XJY8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_B8XJY8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Inducer of CBF expression 4 n=1 Tax=Glycine max RepID=B8XJY8_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g17330 not represented in the dataset |
Glyma06g17330 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g37750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g165000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g17330.2 sequence type=CDS gene model=Glyma06g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGTCGAGAATAAACAACAACGGCGTTGCCTGGATGGGCGAACGAGAAGACGAAAACTCTCGAAACCACAACATCATACCCACCGACACAACCACAACAAACACAGGTTTCGTCGAAACCACAAACAACGACTTAGGTTCTCTCTGCGCCTTCAAGCCCATGCTCGACGTCGACGACGAATGGTACAACAACATCACCAACCACCACCACCACCACCACCACCACCACGACATGACCTTCGACCCCGACAACCTCTTACTCCACGCTGCCACCGCCGTGGACTCCTCCTCCTCCTGCTCCCCCTACTTTTTCCCTCCCAATCCCAAACCCCCCTTTCTTGTCAACCCCTTCGATATGGGCTTTCTTGACCCTCAAGCTTCTTCTTCTCCCTCTCTACCCCTCCTCCCCGAATCAACACACTTCACACCCCCTCACACCACCACCACCGCTTTCGCCGGCTTCCAGAGCCGCCTCCAAGAGAGTGGTTCTTCAAAATCTCTCTTTTTGAGGCCTCTCGAGTCGCTGCCACCCTCCGGGGCGCAACCCACGCTGTTTCAGAAGAGAGCCGCGCTTAGAAAAAACATGGAAGGGAGTGATAATAATAAGAAGAAGAGGAAGGAGAAGGAGAAGGACGAGGAGGTTGAGGATTTGAGTTTCGATGGCTCCGGGTTGAACTATGATTCTGATGACTTGACTGAGAGCAATTATAATAATGTTTCTGAGGGTAATACTGGGAAGAATGGTGGGGTTAGTTCCAACGCGAACAGCACCGTCATCACCGGTTTGGATCAAAAAGGGAAGAAGAAGGGAATGCCTGCTAAGAATTTGATGGCCGAACGACGCCGTAGGAAGAAGCTCAATGATAGACTCTACATGTTGAGGTCCGTTGTTCCCAAGATTAGCAAAATGGACAGGGCTTCAATTCTTGGGGATGCAATTGAGTATCTGAAGGAGCTTCTGCAAAGGATCAATGATCTGCATAACGAGTTGGAATCGACACCAGTGGGTTCTTCACTCACTCCTGTCTCAAGTTTCCATCCTTTGACGCCTACTCCTCCTACGCTGCCAAGCCGAATCAAGGAAGAACTGTGCCCCAGCTCATTGCCCAGCCCCAATGGCCAACCTGCTAGGGTTGAGGTTCGGCTGCGCGAAGGAAGGGCTGTTAACATCCACATGTTTTGTGCCCGCAAGCCTAGTCTGTTGCTCTCAACCATGAGGGCTTTGGATAACCTTGGATTAGACATTCAGCAGGCTGTTATCAGCTGCTTCAATGGATTTGCTATGGATATTTTTCGAGCCGAGCAATGCAAAGAAGGTCAGGATGTCCATCCGGAGCAAATCAAAGCAGTACTCTTGGATTCAGCTGGCTACAATGGCATGATGTAA
>Glyma06g17330.2 sequence type=predicted peptide gene model=Glyma06g17330 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMSRINNNGVAWMGEREDENSRNHNIIPTDTTTTNTGFVETTNNDLGSLCAFKPMLDVDDEWYNNITNHHHHHHHHHDMTFDPDNLLLHAATAVDSSSSCSPYFFPPNPKPPFLVNPFDMGFLDPQASSSPSLPLLPESTHFTPPHTTTTAFAGFQSRLQESGSSKSLFLRPLESLPPSGAQPTLFQKRAALRKNMEGSDNNKKKRKEKEKDEEVEDLSFDGSGLNYDSDDLTESNYNNVSEGNTGKNGGVSSNANSTVITGLDQKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQRINDLHNELESTPVGSSLTPVSSFHPLTPTPPTLPSRIKEELCPSSLPSPNGQPARVEVRLREGRAVNIHMFCARKPSLLLSTMRALDNLGLDIQQAVISCFNGFAMDIFRAEQCKEGQDVHPEQIKAVLLDSAGYNGMM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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