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Report for Sequence Feature Glyma06g17295

Feature Type:gene_model
Chromosome:Gm06
Start:13604735
stop:13612132
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g17295
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61980AT Annotation by Michelle Graham. TAIR10: ARF-GAP domain 1 | chr5:24894472-24899178 FORWARD LENGTH=828 SoyBaseE_val: 0ISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0048610GO-bp Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction SoyBaseN/AISS
GO:0048868GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube development SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0030139GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endocytic vesicle SoyBaseN/AISS
GO:0005543GO-mf Annotation by Michelle Graham. GO Molecular Function: phospholipid binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0521 KOG Putative GTPase activating proteins (GAPs) JGI ISS
PTHR23180Panther CENTAURIN/ARF JGI ISS
PTHR23180:SF22Panther GCN4-COMPLEMENTING PROTEIN JGI ISS
PF00023PFAM Ankyrin repeat JGI ISS
PF00169PFAM PH domain JGI ISS
PF01412PFAM Putative GTPase activating protein for Arf JGI ISS
PF03114PFAM BAR domain JGI ISS
UniRef100_G7J3A5UniRef Annotation by Michelle Graham. Most informative UniRef hit: ADP-ribosylation factor GTPase-activating protein n=1 Tax=Medicago truncatula RepID=G7J3A5_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339D87UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339D87 related cluster n=1 Tax=unknown RepID=UPI0002339D87 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g17295
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g17295 not represented in the dataset
Glyma06g17295 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17295
ParalogEvidenceComments
Glyma04g37780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17295 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g164700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g17295
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g17295
>Glyma06g17295.1   sequence type=CDS   gene model=Glyma06g17295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGCTCCAGTGCATGGAAGAGAGTTCAGAATCGTTACGCTCGAGATGTTTCAAGGAAGGGCTTGGAGAGGCATATGATGGAGACATTTCAATTGCAAGTGCCCTTGAAAATTTTGGAGGAGGGCATAATGATCCTCTATTTGTAACTTTGGGAGGACCTGTCGTGACCAAATTTTCTATTGCTTTGAGAGAAATCAGTACATACAAGGAACTTCTTCGGTCCCAGGCAGAGCACATGCTGAATGACCGGTTACTAAACATGCTAAATGTCGATATCCTAGATGTCAAGGAAGCTAGAAGGCGTTTTGAGAAAGCTTCCCTTGTACATGATCAGGGACGTGAGAAGTTTATGTCATTGAGAAAAAGCACTAGGATGGATATTGCCACTGTCGTAGAAGAGGATTTGCACAATGCAAGAACCTCATTGGAGGAAGCTCGTTTCAATCTGGTTAGTGCTCTCCATAATGTTGAGGCCAAGAAGAGATTTGAGTTTTTGGAGGCTGTCACTGGAGTTATGGATGCTCATCTTCGGTATTATCGACAGGTATATGATGACACGGGATATCAGCTATTACATGAGATGGAGCCTTTCATTATCGAGGTTTTGGCTTATACACAAAAGGCAAGAGAAAGTTACAATGAGAAGCAAATTAGTCTTTGTGAAAGAATGTTGGAGTACAAAAAACATGTTAATCATGAAAGTATGTTGTCCTTGAATGGTCCTTATGACTCTCCCTGTAGAGATGGTCAAGTGCAGCCTTTTTCTAGGATATCAAATAAAGTGGCAGATGCTATAACAGAATCTGCTGAAAATGGAAAGGTTCAAATCATTCGACAAGGATTTCTTTCAAAACGGTCCACAAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGCGGAATGCTTTACTACTTTCGTAAACCATGGAGTGGATTACATAGTGGCAATCAATCATCTTTACACAGAAATTGTGCCACTGACAATAGTGCTGGAATTTTCAGTCGCCTGCTTTCTTCACATTACCATGGATTTATCCCTGATGAAAAATTTGTAGCACGTCATACAGTGAACCTGCTAACATCAACAATCAAGATTGATGCTGAACATTATACATTGCAGGCAGAAAATGCCCTGGATCAGATGGATTGGATGGAAAAGATAACTGGTGTAATTGCCTCCTTATTGAGTGCACAAACACTGCGGCAAACATGTACAATGATAATAGTGTGGCAAAACTTTAGTCACCAATACAAGTATAACATTAGACGTCTTTCTTTGAAGCATCTAGCATTTCTTATCAAATTGAGTGGGGATTCTATAAAAAATGAAAAGCCAATTGAAGTTCTTAGAAAGGTTGGCGGGAATGAAAAATGTGCTGATTGTGGTAAACCTGATCCAGATTGGGCATCCTTAAACCTTGGCATCCTTATTTGCATTGAATGTTCCGGTGTTCACCGTAATCTTGGTGTGCATATATCAAAATCACTGGGGAATCTTTTTGCAAACTCAGTTTGGAAGGAACTGTTGCATTCAACAAGTACTTCGCAAACTGATGACACTCCCGATGGTTCATTCAAGACACACAAAAAGTTATTTCATGCAAGAAAACCAGCACATGATGATCCTCTTTCACTAAAGGAGAGGTTCATTCATGCAAAGAAAGCAGTGTACAGACACGTTGTGAAGTCAGATGTGGATGTCATTGCTATTAGTGGGGAAGCAGGTTTTTCTTCCAACATGCCTTCTTCAAGTAATCCAAACACATCATGTAAAACTAAGACTCGACAAGAGGAGGATATACAAGATGGCTCTAGTGTGCTTCACCTGGTATGCTTAACTAGTGATTCTGCAATGGTAGAGCTGCTCCTACAGTATGGTGCAGACGTAAATGCTATTGATTCTAGAGGGAGGACACCTCTACATTACAGCACTATGAGAGGGGAGAGTGCAATTACAAAAGTGCTTTATTACAAGCTTTGTCATTATCCATCCCATGAAGAATATTGCATTTCAATTTTATATTACTTAACGTGTCTTGCAAACCTCAAATTTGCCAATTATTTCAGGGGGGCCAATCCACTTGCCGGAGACAAAGAAGGCAACACTCCTTTTAAGCTTGCACCGGAACCTGACACTGTTGTCAAAGATACTCTTGCTCTAAACCAGCAAACGACATGCCCTCAAAACTTATTAGAAAAATGA
Predicted protein sequences of Glyma06g17295
>Glyma06g17295.1   sequence type=predicted peptide   gene model=Glyma06g17295   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQLQCMEESSESLRSRCFKEGLGEAYDGDISIASALENFGGGHNDPLFVTLGGPVVTKFSIALREISTYKELLRSQAEHMLNDRLLNMLNVDILDVKEARRRFEKASLVHDQGREKFMSLRKSTRMDIATVVEEDLHNARTSLEEARFNLVSALHNVEAKKRFEFLEAVTGVMDAHLRYYRQVYDDTGYQLLHEMEPFIIEVLAYTQKARESYNEKQISLCERMLEYKKHVNHESMLSLNGPYDSPCRDGQVQPFSRISNKVADAITESAENGKVQIIRQGFLSKRSTNLRGDWKRRYFVLDSRGMLYYFRKPWSGLHSGNQSSLHRNCATDNSAGIFSRLLSSHYHGFIPDEKFVARHTVNLLTSTIKIDAEHYTLQAENALDQMDWMEKITGVIASLLSAQTLRQTCTMIIVWQNFSHQYKYNIRRLSLKHLAFLIKLSGDSIKNEKPIEVLRKVGGNEKCADCGKPDPDWASLNLGILICIECSGVHRNLGVHISKSLGNLFANSVWKELLHSTSTSQTDDTPDGSFKTHKKLFHARKPAHDDPLSLKERFIHAKKAVYRHVVKSDVDVIAISGEAGFSSNMPSSSNPNTSCKTKTRQEEDIQDGSSVLHLVCLTSDSAMVELLLQYGADVNAIDSRGRTPLHYSTMRGESAITKVLYYKLCHYPSHEEYCISILYYLTCLANLKFANYFRGANPLAGDKEGNTPFKLAPEPDTVVKDTLALNQQTTCPQNLLEK*






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