SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G27620 | AT | Annotation by Michelle Graham. TAIR10: cyclin H;1 | chr5:9771762-9774684 FORWARD LENGTH=336 | SoyBase | E_val: 1.00E-135 | ISS |
| GO:0000079 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0000278 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006366 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter | SoyBase | N/A | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009220 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pyrimidine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0010440 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression | SoyBase | N/A | ISS |
| GO:0022402 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell cycle process | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0045736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005675 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: holo TFIIH complex | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016591 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, holoenzyme | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004693 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0019901 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase binding | SoyBase | N/A | ISS |
| KOG2496 | KOG | Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit | JGI | ISS | |
| PTHR10026 | Panther | CYCLIN | JGI | ISS | |
| PTHR10026:SF8 | Panther | CYCLIN H | JGI | ISS | |
| PF00134 | PFAM | Cyclin, N-terminal domain | JGI | ISS | |
| UniRef100_G7I853 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cyclin-H1-1 n=1 Tax=Medicago truncatula RepID=G7I853_MEDTR | SoyBase | E_val: 2.00E-163 | ISS |
| UniRef100_I1KBX5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBX5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g17280 not represented in the dataset |
Glyma06g17280 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g164600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g17280.2 sequence type=transcript gene model=Glyma06g17280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TAAATCCTTATTATGTTTTAGAAAGGCACGTGAGGAGTGTTACTTAGTCTAAAAATCACGTGAGTCCAATTTGTCCAAGACCCGCAAGCCCAAACATCAGTCATCTCCTTCACAGGAACCCTAGATCTGAAACTTACCTTGACTCCGCTCTGCCACGGCTGAGAAAATAGCGACGCGGAAACACGCTCGTCTTCACGACCCTGCGATCCAGCGCGGCGTGTCCTGCGATTCCTCTCTCCGACGAGTCTCCGCAGGGTGAAGAATTGCGAGGCCAGCCGCCGGTGAAGAATCGCGCGATTCGTCTGGAAATCGCGATTCAAGCACGATTCACCCCCGATACATAGATTCAACCACGATTCAGGAACAAAAACGAGACAACCTTCGATTCGTATTGGTAGAAGCTGGCATCGTATCGAATCGTGCGATACGTATCGGTAGAAGCTGGTATCGTATCGAATCGTGCGATACGTATCGTGAATCGTACGATACTAACTACCGTGGTCTGAACCATTTTAATTTGTGGATCAAATAACAAGGCTCCTCGGTTAGAATTCCTGATCGGTCATGGCTGATTTTCAGACCTCTACCCACAGAGCCAAGTGGATTTTCTCTCCTCAACAGCTGGTTGAGAAATATAGAGCTGCCAATCAGAGAGCCAAACAAATTCTAGAGAAGTGTGGAGCAACACTAATGGAAGTAGATGTTGATGGATCGTTGTCATATCCTGAACCCCAAATGACTGCAAAGGATAGTGCTGAAAAGCATTCTCGAACAAAACCTCTTACTATTGAAGAAGAACAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGTAACAATTTCCGCTTCCCTCATAAGATCCAGGCAACAGCCCTTATCTATTTTAAAAGATTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTACGCAACTCAAATGCATTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTTAGAAAATACAAAAGTCCTTCTGAGAAGGAATTGAAGCATATCAACCGAAAACTGAAGTCTTGTTGGGGTCATCACTCTCATGACGAGGGCAAGAAGCGGGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCAAATGAAGCTCAAAATATGCCATCTATTGCCTAGCTCATTTCATATGGATGGCAATTTTTTTTTGTTTCTATTTGGATACAAAAAATGACTCGGTCAGTGGCCAAAGGAAAAGGAATCTTTTGAAAACTCCTTCCGCTGGCTTACTAGTGAGTCTGATTTTGTTGCTTCACTTATGTCTTCTTTGTTCCCAAATGAACTTATTGCCTGAAAATGCTTCGATTAAAAATTCCATGCTCGTGGTGTTTTTATTTTGCTTATTTTGCCCTTGCCACATTTCACTTCTACAAATATTTCTGTTTAAACTACAAATCATTTCCC
>Glyma06g17280.1 sequence type=CDS gene model=Glyma06g17280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGATTTTCAGACCTCTACCCACAGAGCCAAGTGGATTTTCTCTCCTCAACAGCTGGTTGAGAAATATAGAGCTGCCAATCAGAGAGCCAAACAAATTCTAGAGAAGTGTGGAGCAACACTAATGGAAGTAGATGTTGATGGATCGTTGTCATATCCTGAACCCCAAATGACTGCAAAGGATAGTGCTGAAAAGCATTCTCGAACAAAACCTCTTACTATTGAAGAAGAACAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGTAACAATTTCCGCTTCCCTCATAAGATCCAGGCAACAGCCCTTATCTATTTTAAAAGATTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTACGCAACTCAAATGCATTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTAATTGTTTCTCATTCTAATGTTTGTCCTTTAACCGAACAAATGTGTAATTCCAAATCAACATTTTGTATTGGCTGGGAACCGTGGGTTACTTCTGTTTTACATGGACCACTGTGTGGCCTTGATTTTGTATGCAGGTTAGAAAATACAAAAGTCCTTCTGAGAAGGAATTGA >Glyma06g17280.2 sequence type=CDS gene model=Glyma06g17280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGATTTTCAGACCTCTACCCACAGAGCCAAGTGGATTTTCTCTCCTCAACAGCTGGTTGAGAAATATAGAGCTGCCAATCAGAGAGCCAAACAAATTCTAGAGAAGTGTGGAGCAACACTAATGGAAGTAGATGTTGATGGATCGTTGTCATATCCTGAACCCCAAATGACTGCAAAGGATAGTGCTGAAAAGCATTCTCGAACAAAACCTCTTACTATTGAAGAAGAACAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTATGTAACAATTTCCGCTTCCCTCATAAGATCCAGGCAACAGCCCTTATCTATTTTAAAAGATTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAACACATTATGTTGACCTGCATATATGCTGCCTGTAAAATAGAAGAAAATCATGTGTCAGCTGAGGAGCTTGGTAAGGGGATATCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTATCAGAGTTTGGAATTTGATCTTATTGTGTATGCACCATATCGCTCAGTTGAAGGTTTTATAAATGATATGGAGGAATTCTTTAATGCTGGTGATAACCAGCTTGAAATGCTCAAGACTTTGCAAGAGACAGCAAGATTTGAAGTTGATAAAATGATGCTTACAGATGCACCACTTTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCTTTACGCAACTCAAATGCATTCCACAGAGTCATTGACTTTGATAGTTATCTTAGGGGTATTTTTTCCCGTGAGAATTCCATGCATACAATGTCCGAGCTTTCTGAATCACTGGATGCAATTGATTCTTGGGTTAGAAAATACAAAAGTCCTTCTGAGAAGGAATTGAAGCATATCAACCGAAAACTGAAGTCTTGTTGGGGTCATCACTCTCATGACGAGGGCAAGAAGCGGGAGAAGAAATCAAAGCACAAGTCCAAAAAGAGCTCAAATGAAGCTCAAAATATGCCATCTATTGCCTAG
>Glyma06g17280.1 sequence type=predicted peptide gene model=Glyma06g17280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEPQMTAKDSAEKHSRTKPLTIEEEQCIKVFYENKLQEVCNNFRFPHKIQATALIYFKRFYLQWSVMEHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALRNSNAFHRVIDFDSYLRGIFSRENSMHTMSELSESLDAIDSWVIVSHSNVCPLTEQMCNSKSTFCIGWEPWVTSVLHGPLCGLDFVCRLENTKVLLRRN* >Glyma06g17280.2 sequence type=predicted peptide gene model=Glyma06g17280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADFQTSTHRAKWIFSPQQLVEKYRAANQRAKQILEKCGATLMEVDVDGSLSYPEPQMTAKDSAEKHSRTKPLTIEEEQCIKVFYENKLQEVCNNFRFPHKIQATALIYFKRFYLQWSVMEHQPKHIMLTCIYAACKIEENHVSAEELGKGISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFINDMEEFFNAGDNQLEMLKTLQETARFEVDKMMLTDAPLLFPPGQLALAALRNSNAFHRVIDFDSYLRGIFSRENSMHTMSELSESLDAIDSWVRKYKSPSEKELKHINRKLKSCWGHHSHDEGKKREKKSKHKSKKSSNEAQNMPSIA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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