Glyma06g17180 - SoyBase

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Report for Sequence Feature Glyma06g17180

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13497658
stop:	13500423
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61890	AT	Annotation by Michelle Graham. TAIR10: Integrase-type DNA-binding superfamily protein \| chr5:24852639-24853744 REVERSE LENGTH=248	SoyBase	E_val: 3.00E-58	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7J397	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene-responsive transcription factor RAP2-6 n=1 Tax=Medicago truncatula RepID=G7J397_MEDTR	SoyBase	E_val: 1.00E-75	ISS
UniRef100_UPI00023384A7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023384A7 related cluster n=1 Tax=unknown RepID=UPI00023384A7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17180

Paralog	Evidence	Comments
Glyma04g37866	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g163700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17180

Limit To All Plant Sequences

>Glyma06g17180.2   sequence type=CDS   gene model=Glyma06g17180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAGATCAATATCACATTCTTCTGAAAGAGAAGAGGAATATGATTTGTTCCCAATATATTCTGAAAGGTCTCAGCAAGACATGTCAGCCATGGTTTCTGCTCTCACACAAGTCATTGGTGGCTCCAATAGTGATTCTCTTCAGCAGCATGAAGGCCTTTTAACTTCTTCACATAACAACACCTCAACCCAGAATAATAATGAACAATCCCAAGCACCACAACAAGAACAAGGGAGTGTAAGAAGAAGACACTACAGAGGAGTGAGGCAGCGTCCATGGGGAAAGTGGGCTGCAGAGATTCGCGATCCGAAGAAAGCAGCGAGGGTATGGCTTGGAACCTTTGAAACAGCTGAAGCTGCAGCTCTTGCTTATGATGAAGCTGCTCTTAGATTCAAAGGAAGCAAAGCAAAACTCAATTTCCCTGAAAGGGTTCAAGGCACAGCTAGCGAATTTGGTTACCACCTCACAAATCAGCACAGCACTAGTAGTCATGATCAGCAAGCTTCTAACCCTATTATTACTCCACACTTTGCTACTACTCAAGAAACTTATTCACCAAGTCATCACTTTCAATATGCACAACAACAACTCATGGGTGGTGGGAGTAACAGCTTCAATAACAACCAAGATATGCTTCGTTTCTATGGGGGACATAACATGTTTGTTTCTTCTCAGCAATCTGCATCATCGTCTTCTTCCACTGCACTGTCTCAGAATCAGCAGGATGAGTTGCTGAGATTTTCGATGCAATTTGGAGCTTCTTCTCATTCTGACCATTCAGGGAATTGGAGGGGTGGACAATGA

Predicted protein sequences of Glyma06g17180

Limit To All Plant Sequences

>Glyma06g17180.2   sequence type=predicted peptide   gene model=Glyma06g17180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRSISHSSEREEEYDLFPIYSERSQQDMSAMVSALTQVIGGSNSDSLQQHEGLLTSSHNNTSTQNNNEQSQAPQQEQGSVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEAAALAYDEAALRFKGSKAKLNFPERVQGTASEFGYHLTNQHSTSSHDQQASNPIITPHFATTQETYSPSHHFQYAQQQLMGGGSNSFNNNQDMLRFYGGHNMFVSSQQSASSSSSTALSQNQQDELLRFSMQFGASSHSDHSGNWRGGQ*

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