Glyma06g17170 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g17170

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13486761
stop:	13489697
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61850	AT	Annotation by Michelle Graham. TAIR10: floral meristem identity control protein LEAFY (LFY) \| chr5:24844295-24846933 FORWARD LENGTH=420	SoyBase	E_val: 1.00E-166	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009740	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010077	GO-bp	Annotation by Michelle Graham. GO Biological Process: maintenance of inflorescence meristem identity	SoyBase	N/A	ISS
GO:0010582	GO-bp	Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0031490	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin DNA binding	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0043621	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein self-association	SoyBase	N/A	ISS
PF01698	PFAM	Floricaula / Leafy protein	JGI		ISS
UniRef100_Q0GYP2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: LEAFY-like protein n=1 Tax=Glycine max RepID=Q0GYP2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A5E9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A5E9 related cluster n=1 Tax=unknown RepID=UPI000233A5E9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17170

Paralog	Evidence	Comments
Glyma04g37900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g163600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g17170

Limit To All Plant Sequences

>Glyma06g17170.1   sequence type=CDS   gene model=Glyma06g17170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCCAGACGCATTCACCGCCAGCCTATTCAAGTGGGACCCACGCACCGTCCTCCCGCCCGCGCCCCCCCCGCCGCCCCCGCGACCTCCCCTCCTCGAATACGCGGTCGCTCCGCCGCCAGTGACCCCGTCGTTCCATCCCTCGAGGGCGGCGGCGCCGCGCGAGCTCGGAGGACTGGAGGAGCTCTTTCAGGCTTACGGCATCCGCTACTACACGGCGGCGAAGATCGCCGAGCTCGGGTTCACGGTCAGCACGCTGGTGGACATGAAGGACGAGGAGCTCGACGACATGATGAACAGCCTCTCCCAGATTTTCCGCTGGGACCTCCTCGTCGGCGAACGCTACGGCATCAAAGCCGCCGTCAGAGCCGAACGACGCCGCGTTGAAGATGACGACATCAAGCGCCGCAATAACAACAACAACCTCCTCTCCGCCGACACCACCACCAACGCCCTCGACGCCCTCTCTCAAGAAGGCTTGTCGGAGGAGCCGGTGATGCAACGAGAGAAGGAGGCGGTGGGGAGCGGGGGAGGGAGCACGTGGGAGGTGGTGGTGGCGGCGGAGGAGAGGAGGAAGCAGCAGAGGAGACGGAGGACGAGGATGAAGACGAATAATCTTCATCACGAAGACAACGAGGAGCTTGAGGATGATGAAGGAGAACAGAATGACGAAGGAAACATTAACACTGGTGGGGGTTGTGAGAGGCAAAGGGAGCATCCTTTCATCGTGACAGAGCCTGGGGAAGTTGCACGTGGAAAGAAGAACGGTTTGGACTATCTGTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATGCAGGTTCAGGCCATTGCCAAGGACCGCGGTGAAAAATGCCCCACCAAGGTGACAAATCAGGTGTTTAGGTACGCGAAGAAGGCTGGGGCAAGCTACATCAACAAGCCAAAGATGCGACACTACGTGCACTGCTATGCCTTACACTGTCTGGACGAGGAGGTCTCAAACGAGCTTCGAAGGGCGTTCAAGGAGAGAGGGGAGAACGTTGGAGCGTGGAGGCAAGCATGTTACAAGCCCCTTGTGGCCATTGCCGCGCGTCAAGGTTGGGACATTGACGCCATATTCAATGCTCATCCTCGTCTTTCCATTTGGTATGTTCCCACGAAGCTTCGTCAGCTTTGTCACGCTGAGAGAAACAGTGCCGCAGCTTCAAGCTCCGTGTCTGCTGGCAGTGCTCACCTTCCCTTCTAA

Predicted protein sequences of Glyma06g17170

Limit To All Plant Sequences

>Glyma06g17170.1   sequence type=predicted peptide   gene model=Glyma06g17170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDPDAFTASLFKWDPRTVLPPAPPPPPPRPPLLEYAVAPPPVTPSFHPSRAAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDDDIKRRNNNNNLLSADTTTNALDALSQEGLSEEPVMQREKEAVGSGGGSTWEVVVAAEERRKQQRRRRTRMKTNNLHHEDNEELEDDEGEQNDEGNINTGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSAGSAHLPF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain