Glyma06g17120 - SoyBase

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Report for Sequence Feature Glyma06g17120

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13449540
stop:	13453951
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g17120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G51020	AT	Annotation by Michelle Graham. TAIR10: crumpled leaf \| chr5:20745560-20747165 REVERSE LENGTH=269	SoyBase	E_val: 1.00E-150	ISS
GO:0000302	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to reactive oxygen species	SoyBase	N/A	ISS
GO:0010020	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast fission	SoyBase	N/A	ISS
GO:0017009	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein-phycocyanobilin linkage	SoyBase	N/A	ISS
GO:0043572	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid fission	SoyBase	N/A	ISS
GO:0051302	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell division	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009707	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast outer membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF06206	PFAM	CpeT/CpcT family (DUF1001)	JGI		ISS
UniRef100_E6NU06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: JHL07K02.6 protein n=1 Tax=Jatropha curcas RepID=E6NU06_9ROSI	SoyBase	E_val: 3.00E-166	ISS
UniRef100_I1KBV9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBV9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g17120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g17120 not represented in the dataset	Glyma06g17120 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g17120

Paralog	Evidence	Comments
Glyma04g37950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g17120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g163100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g17120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g17120

Limit To All Plant Sequences

>Glyma06g17120.3   sequence type=transcript   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTCTTATTCCCATTCTGGAAACTGCAAAGCAGAGCAGAGCAGAGGAGGTTTTAATCAATCATTTGGGATTTTGGGTACTATAATCAATAGAAATAGAACCAAATCAAAATTGGAACCTCTGGCTCTGGATGATGAACGATTCACAGGCCAGAGACCAATAAGACAGACAGAGGTAACGTAATTCAACTTTCGGCTTCTTCTTCTTCTTCTAGTTGTGGTTGTTGTTCCACTCACACTCAGATTGCGCCGCAACTAATTCCAATTCCATAAAAGAAAAGCGTAGAAGAAAGATGGGTACGGATTCGGATTCGGATGCGAATGGATGGAACCGTGCTCGAGGGTTGGCCCTTAAGACTCTGCTACTCTTTGGTGGCGCACTTCTCGTCAAGCGCCTCCGCAAGTCCACCACGCGCTGGGACCACGCTCATTTCGTCTCCAAGTCCCTCGCCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCTGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTTTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCATTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGGGATATTGCAGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATAAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGAATGGAGCAACCCACTGTACTTCAGAACTTGCAATTTTGAAGAACAATGATATACATACCTGGGATAGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGCCCTTATGAGTTCAAGCCTGCACCAACCTCCAGTTTTAGTGATATGTTTTCTCCCTTGAATTTCCCCCCTCCACCATCCATGGAGAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAACAAGAATGAAAGCATTCAATATAACCACTGTGTAATTCTGCTATCAATATATTGTTTTTCTCGTTAATTAGCTATATCTTTTTTCTTAGAGCATGATTGAATTATATTTTGTTTAGAGATTATAATCTGATAAATAAATAAAATATATATATGTTGGTGGTACTATTCAAATATGTTGGTTATTTAACAGAAGGAATAAGATAACCATGCGAAAATTGAACTAAATAATCAAATGAATAGGAATAAATTAGTGGTCTATTTTTTCTGACGTAAAGAGTAATGGAATAAAAAATCCAGCCTAAAATTTGTTGTTCAGATAGAAGTATAATCCCACAAGCACTGCAATTCCCAGGGCAGCTGCAATAGGAAGTGCGT

>Glyma06g17120.4   sequence type=transcript   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTATTCCCATTCTGGAAACTGCAAAGCAGAGCAGAGCAGAGGAGGTTTTAATCAATCATTTGGGATTTTGGGTACTATAATCAATAGAAATAGAACCAAATCAAAATTGGAACCTCTGGCTCTGGATGATGAACGATTCACAGGCCAGAGACCAATAAGACAGACAGAGAAGAAAGATGGGTACGGATTCGGATTCGGATGCGAATGGATGGAACCGTGCTCGAGGGTTGGCCCTTAAGACTCTGCTACTCTTTGGTGGCGCACTTCTCGTCAAGCGCCTCCGCAAGTCCACCACGCGCTGGGACCACGCTCATTTCGTCTCCAAGTCCCTCGCCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCTGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTTTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCATTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGGGATATTGCAGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATAAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGAATGGAGCAACCCACTGTACTTCAGAACTTGCAATTTTGAAGAACAATGATATACATACCTGGGATAGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGCCCTTATGAGTTCAAGCCTGCACCAACCTCCAGTTTTAGTGATATGTTTTCTCCCTTGAATTTCCCCCCTCCACCATCCATGGAGAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAACAAGAATGAAAGCATTCAATATAACCACTGT

>Glyma06g17120.5   sequence type=transcript   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAATCAATAGAAATAGAACCAAATCAAAATTGGAACCTCTGGCTCTGGATGATGAACGATTCACAGGCCAGAGACCAATAAGACAGACAGAGGTAACGTAATTCAACTTTCGGCTTCTTCTTCTTCTTCTAGTTGTGGTTGTTGTTCCACTCACACTCAGATTGCGCCGCAACTAATTCCAATTCCATAAAAGAAAAGCGTAGAAGAAAGATGGGTACGGATTCGGATTCGGATGCGAATGGATGGAACCGTGCTCGAGGGTTGGCCCTTAAGACTCTGCTACTCTTTGGTGGCGCACTTCTCGTCAAGCGCCTCCGCAAGTCCACCACGCGCTGGGACCACGCTCATTTCGTCTCCAAGTCCCTCGCCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCTGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTTTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCATTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGGGATATTGCAGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATAAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGAATGGAGCAACCCACTGTACTTCAGAACTTGCAATTTTGAAGAACAATGATATACATACCTGGGATAGGGGTTATGATGATGATGGAAATCAAGTTAGTTTTCTTCATCTGGTTTTATCTAGTTGGGCTAGTTTGGTGGTTGCTTTAACTTTATAGTTGCAAATTTATATAGTATATGACAACAACAAAAA

Coding sequences of Glyma06g17120

Limit To All Plant Sequences

>Glyma06g17120.1   sequence type=CDS   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACGGATTCGGATTCGGATGCGAATGGATGGAACCGTGCTCGAGGGTTGGCCCTTAAGACTCTGCTACTCTTTGGTGGCGCACTTCTCGTCAAGCGCCTCCGCAAGTCCACCACGCGCTGGGACCACGCTCATTTCGTCTCCAAGTCCCTCGCCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCTGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTTTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCATTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGGGATATTGCAGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATAAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGCAGAATGGAGCAACCCACTGTACTTCAGAACTTGCAATTTTGAAGAACAATGATATACATACCTGGGATAGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGCCCTTATGAGTTCAAGCCTGCACCAACCTCCAGTTTTAGTGATATGTTTTCTCCCTTGAATTTCCCCCCTCCACCATCCATGGAGAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAACAAGAATGA

>Glyma06g17120.3   sequence type=CDS   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACGGATTCGGATTCGGATGCGAATGGATGGAACCGTGCTCGAGGGTTGGCCCTTAAGACTCTGCTACTCTTTGGTGGCGCACTTCTCGTCAAGCGCCTCCGCAAGTCCACCACGCGCTGGGACCACGCTCATTTCGTCTCCAAGTCCCTCGCCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCTGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTTTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCATTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGGGATATTGCAGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATAAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGAATGGAGCAACCCACTGTACTTCAGAACTTGCAATTTTGAAGAACAATGATATACATACCTGGGATAGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGCCCTTATGAGTTCAAGCCTGCACCAACCTCCAGTTTTAGTGATATGTTTTCTCCCTTGAATTTCCCCCCTCCACCATCCATGGAGAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAACAAGAATGA

>Glyma06g17120.4   sequence type=CDS   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACGGATTCGGATTCGGATGCGAATGGATGGAACCGTGCTCGAGGGTTGGCCCTTAAGACTCTGCTACTCTTTGGTGGCGCACTTCTCGTCAAGCGCCTCCGCAAGTCCACCACGCGCTGGGACCACGCTCATTTCGTCTCCAAGTCCCTCGCCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCTGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTTTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCATTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGGGATATTGCAGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATAAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGAATGGAGCAACCCACTGTACTTCAGAACTTGCAATTTTGAAGAACAATGATATACATACCTGGGATAGGGGTTATGATGATGATGGAAATCAAGTTTGGGGACAAAAAGAAGGCCCTTATGAGTTCAAGCCTGCACCAACCTCCAGTTTTAGTGATATGTTTTCTCCCTTGAATTTCCCCCCTCCACCATCCATGGAGAGAAGAATAGAGGGTTCATTTGTTTTGCAAGAACAAGAATGA

>Glyma06g17120.5   sequence type=CDS   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACGGATTCGGATTCGGATGCGAATGGATGGAACCGTGCTCGAGGGTTGGCCCTTAAGACTCTGCTACTCTTTGGTGGCGCACTTCTCGTCAAGCGCCTCCGCAAGTCCACCACGCGCTGGGACCACGCTCATTTCGTCTCCAAGTCCCTCGCCGGCGAAAAGTATTCCAAGGAGCAAGCTTCCAGAGACCCTGATAACTATTTCAACATTAGAATGCTTACATGCCCCGCAGCGGAGCTAGTGGATGGTTCCAAGGTTTTGTATTTTGAACAGGCTTTTTGGAGGACTCCACAAAAACCATTTCGGCAGAGGCTTTTTATGGTGAAACCTTGTCCTAAAGAGTTGAAATGTGATGTTGAGTTAAGTACATATGCCATTAGAGACATGGAGGAGTACAAAAATTTCTGTGATCGACCAAGGGATCAGCGTCCACAGCCGGAAGAAGTCATTGGGGATATTGCAGAACATTTGACAACAGTACATCTTAAGCGTTGTCCACGTGGAAAACGTTGCTTATATAAAGGTTCAACCCCACCTGGTGGATTTCCTAATTCATGGAATGGAGCAACCCACTGTACTTCAGAACTTGCAATTTTGAAGAACAATGATATACATACCTGGGATAGGGGTTATGATGATGATGGAAATCAAGTTAGTTTTCTTCATCTGGTTTTATCTAGTTGGGCTAGTTTGGTGGTTGCTTTAACTTTATAG

Predicted protein sequences of Glyma06g17120

Limit To All Plant Sequences

>Glyma06g17120.1   sequence type=predicted peptide   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDSDSDANGWNRARGLALKTLLLFGGALLVKRLRKSTTRWDHAHFVSKSLAGEKYSKEQASRDPDNYFNIRMLTCPAAELVDGSKVLYFEQAFWRTPQKPFRQRLFMVKPCPKELKCDVELSTYAIRDMEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTVHLKRCPRGKRCLYKGSTPPGGFPNSWQNGATHCTSELAILKNNDIHTWDRGYDDDGNQVWGQKEGPYEFKPAPTSSFSDMFSPLNFPPPPSMERRIEGSFVLQEQE*

>Glyma06g17120.3   sequence type=predicted peptide   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDSDSDANGWNRARGLALKTLLLFGGALLVKRLRKSTTRWDHAHFVSKSLAGEKYSKEQASRDPDNYFNIRMLTCPAAELVDGSKVLYFEQAFWRTPQKPFRQRLFMVKPCPKELKCDVELSTYAIRDMEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTVHLKRCPRGKRCLYKGSTPPGGFPNSWNGATHCTSELAILKNNDIHTWDRGYDDDGNQVWGQKEGPYEFKPAPTSSFSDMFSPLNFPPPPSMERRIEGSFVLQEQE*

>Glyma06g17120.4   sequence type=predicted peptide   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDSDSDANGWNRARGLALKTLLLFGGALLVKRLRKSTTRWDHAHFVSKSLAGEKYSKEQASRDPDNYFNIRMLTCPAAELVDGSKVLYFEQAFWRTPQKPFRQRLFMVKPCPKELKCDVELSTYAIRDMEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTVHLKRCPRGKRCLYKGSTPPGGFPNSWNGATHCTSELAILKNNDIHTWDRGYDDDGNQVWGQKEGPYEFKPAPTSSFSDMFSPLNFPPPPSMERRIEGSFVLQEQE*

>Glyma06g17120.5   sequence type=predicted peptide   gene model=Glyma06g17120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDSDSDANGWNRARGLALKTLLLFGGALLVKRLRKSTTRWDHAHFVSKSLAGEKYSKEQASRDPDNYFNIRMLTCPAAELVDGSKVLYFEQAFWRTPQKPFRQRLFMVKPCPKELKCDVELSTYAIRDMEEYKNFCDRPRDQRPQPEEVIGDIAEHLTTVHLKRCPRGKRCLYKGSTPPGGFPNSWNGATHCTSELAILKNNDIHTWDRGYDDDGNQVSFLHLVLSSWASLVVALTL*

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