|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G23760 | AT | Annotation by Michelle Graham. TAIR10: FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: transferases, transferring glycosyl groups (TAIR:AT4G14100.1); Has 108 Blast hits to 104 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). | chr3:8562965-8564640 REVERSE LENGTH=194 | SoyBase | E_val: 4.00E-56 | ISS |
GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
UniRef100_D7MH74 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MH74_ARALL | SoyBase | E_val: 5.00E-51 | ISS |
UniRef100_UPI00023384A5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023384A5 related cluster n=1 Tax=unknown RepID=UPI00023384A5 | SoyBase | E_val: 1.00E-109 | ISS |
Glyma06g17111 not represented in the dataset |
Glyma06g17111 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g17111.1 sequence type=CDS gene model=Glyma06g17111 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGACTTTAACGTGCACGATAGGCAACTTCAACATTCTCCAGTATCAGCTCGACCACCTCGTCACCTACGACCTCCAATGGAACAACGGCACCTCCTTCATCTACACCCTCCATCCCTCAGACCCCACATGCCAAGTTCTGCACTTTCAAGTGGGTATTCTCCGCCCCAATTGGCTCCTCGGCGCCACATATTTGGGTCAGCAGCATGTTGATAATTTCCTCTGTAATGTATGGGAGAAAGTTGATGAGGATGTTCTCACTCGTAGACCTGTTAAGTGGATCTTCTACTCAGGATACACTGCTCACGTGATGACATTGGAGGTTGGTGCAGTGCTTGAGGATCCAAATTGGCAGGCTCCTGTGTATTGTTTTAATGAGAATGAGAAGGAAAAGAATAGCCCCATTTTGAGACCTGCTGTTCGTGGTGGTTATCTTGGGAGTTTGATGAGAGAGATACCCGCTCGGGAAACTAAGTAA
>Glyma06g17111.1 sequence type=predicted peptide gene model=Glyma06g17111 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQTLTCTIGNFNILQYQLDHLVTYDLQWNNGTSFIYTLHPSDPTCQVLHFQVGILRPNWLLGATYLGQQHVDNFLCNVWEKVDEDVLTRRPVKWIFYSGYTAHVMTLEVGAVLEDPNWQAPVYCFNENEKEKNSPILRPAVRGGYLGSLMREIPARETK*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||