Glyma06g16960 - SoyBase

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Report for Sequence Feature Glyma06g16960

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13332032
stop:	13340292
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G23570	AT	Annotation by Michelle Graham. TAIR10: XS domain-containing protein / XS zinc finger domain-containing protein-related \| chr5:7943621-7945874 FORWARD LENGTH=625	SoyBase	E_val: 0	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0010025	GO-bp	Annotation by Michelle Graham. GO Biological Process: wax biosynthetic process	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0010267	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference	SoyBase	N/A	ISS
GO:0035196	GO-bp	Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA	SoyBase	N/A	ISS
GO:0051607	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to virus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
PTHR21596	Panther	RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED	JGI		ISS
PTHR21596:SF1	Panther	TRANSCRIPTION FACTOR X1-LIKE	JGI		ISS
PF03468	PFAM	XS domain	JGI		ISS
PF03470	PFAM	XS zinc finger domain	JGI		ISS
UniRef100_D3GBV0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Reduced leaflet 1 n=1 Tax=Lotus japonicus RepID=D3GBV0_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1KBU1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBU1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16960

Paralog	Evidence	Comments
Glyma04g38100	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g161700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g16960

Limit To All Plant Sequences

>Glyma06g16960.3   sequence type=transcript   gene model=Glyma06g16960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCACATTTCATTAAAATTTCAAGTCCACCTTGGTCTTCCAGCTCTAACGTTACTTTGTCCCGCATACTTCACGCCTCTGCTGTTACCACACTCACTCACTACTACTACTCGCTCTCCCCACGCTACACTGGTTGCGCGTGAGTCTCAATCGCCGCATTCTCTTCGCGCGATCTTTCTACGATCACTGAGCATATACAAATGAGTTCGAAAAGAGGGGGTGGGAGACCTGTAACCGTGGCTAACAATGATATGTCCAAAGGGAAAAGCATATCTGAAGCTCATCCAAAAGTTGAGCAGTTGACTCAGGGTATCGCTGACACTAAGCTAAACTCAGGACAAGATGATGGTGAGTGGGAGGTATATGCAAGGAAATCCAAGAACAAGGCTGGAAGCAGTGCTGCAAAACCATGGGCCCCCCCAGCCCATAATTCTAATCCTAGGGCATGGGGGAATGCAGAAATGGCTCAAAAGCCAGGCATCCGGGGTCATGGTGGACTTGGAAGATCTTCGGGAAATCCCTGGCAGACACAAAATGCTAACTTTAGGAGACCAGCTGGCAGAGGAAATGGAAGGCCTCAGTTAGCAACAAGTGGATATGAAAGCAACTATGTTCCAAATCCTGCAATTCGGCCTCCACTTGAGCATGGCTGGAACTGGCAATCCAGACCTGGTGCATTGCAGTCCAATGCAAGGGATGAAATTTCACCAGAGGACCTTCAAAAGAATGATGATGTTGATGACGATGATGGGGAGGAGGACTCTGATGCTTTTGAAGATACCGATGATGATCTGATGAGTGATGACTATGATTCAGATGCTAGTCAAAAGAGTCATGAGACACGTAAGAAAATCAAATGGTTTAAGAAGTTTTTTGAGATTTTGGATGGCTTGACTGTTGAACAGATAAATGAACCAGAAAGACAGTGGCATTGTCCAGCTTGCCAAGGTGGTCCTGGAGCTATTGATTGGTACAGAGGACTGCAGCCCTTGGTGACACATGCCAAAACAAAGGGATCTAAAAGGGTGAAGATTCACAGGGAGCTTGCTATACTTTTGGATGAGGAATTACGCAGAAGGGGTACTTCAGTAATTCCAGCTGGGGAAGTATTTGGAAAATGGAAAGGTTTGAAAGAAGAAGAAAAAGACCATGACATAGTTTGGCCCCCAATGGTTGTCATTCAGAATACAAAGCTTGAACAGGATGAAAATGATAAGTGGATAGGTATGGGTAACCAAGAACTTCTTGATTATTTTAGCACATATGATGCTGTGAGAGCACGACACTCTTATGGCCCACAGGGTCATCGTGGGATGAGTGTTTTGATATTTGAAGCCTCAGCTAGTGGCTATCTAGAGGCAGAGCGTCTCCACAAGCATTTTGCAGAGCAAGGAACTGATAAAGATTCTTGGTTCAGTCGCCCTATTTTATATCTCCCTGGGGGGAATCGCCAGCTCTATGGATACATGGCTACAAAAGAAGATATGGACTTTTTCAACAGACATTCCCAAGGTAAATCTAGACTCAAATATGACATAAGATCATATCAGGAGATGGTTGTACACCAAATTCGGCAAATGAATGAAGACAACCAACAGCTGCTCTATTTTAAGAACAAGGCTGTGAAAGGTGCAAAACACACAAAAGCTCTTGAAGAATCTATTGGTATAATGTCTGAGAAGCTGCGGAAGACAATGGAGGAAAATCGCATTGTGAGGAGGAGAACTAAAATGCAACATGAAGAGACCAAAGAAGAGATGTATATGCAAGAACAATTCTTCAAGGACCAGATCAAAATCATTCATGATTCAAGGGATGCAAAGGAAGAAGATTTCGAGAGGATGCAACAGGAGGAACGTGAGAAGGTGAAGCAGTCAAGTACTACTGGTCATGTGAATGCTGAGGAATATAGACTCAAGGTGGAAGAGTATCTGAAATTTGTTGAGGTCCAAGATAAAGAAATGGAGAACTTTGTTGCTGAAAAGGAGAAGCTGTTACATGCTCATGGCACGGGTTATGCTGCAATGAAGCGGAGGCATTGGGAGGAAGAAGTTCAGTATGAGCAGAAGTTTGATGAGGAATTGGCTAACCTCATGGAAAAGTACTCCCCGTCGTAGAAGTCCAATGGTATCTAATGGTAGGGTCTTTTGCACAGACTCATACAAACAGATAAACACAGCCAAATAGGTAGAGAAAATAAATAGAGACATCAGCTTTCTAGAGATTGAGACTTTTACTAAATTCAGTATGTCATTTTCTTTTCTTTAGTACTTGTTGGCATTTGGTACATTCTTGGATATAGAAACCTGGTTAAAATTTTAAATGGTGGTGCATGCGGTTCGAATTGAATGACAAATTTTACAAATTGGACGTTGCCATGCCCTGATGAATGATTTATGCATTATGAGTTTGAATATCTTGAGCCAGGGGATTTTACTGTTTCAATATGTTTGAAAGTTCCGTTAAGAATCAAC

Coding sequences of Glyma06g16960

Limit To All Plant Sequences

>Glyma06g16960.2   sequence type=CDS   gene model=Glyma06g16960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGAAAAGAGGGGGTGGGAGACCTGTAACCGTGGCTAACAATGATATGTCCAAAGGGAAAAGCATATCTGAAGCTCATCCAAAAGTTGAGCAGTTGACTCAGGGTATCGCTGACACTAAGCTAAACTCAGGACAAGATGATGGTGAGTGGGAGGTATATGCAAGGAAATCCAAGAACAAGGCTGGAAGCAGTGCTGCAAAACCATGGGCCCCCCCAGCCCATAATTCTAATCCTAGGGCATGGGGGAATGCAGAAATGGCTCAAAAGCCAGGCATCCGGGGTCATGGTGGACTTGGAAGATCTTCGGGAAATCCCTGGCAGACACAAAATGCTAACTTTAGGAGACCAGCTGGCAGAGGAAATGGAAGGCCTCAGTTAGCAACAAGTGGATATGAAAGCAACTATGTTCCAAATCCTGCAATTCGGCCTCCACTTGAGCATGGCTGGAACTGGCAATCCAGACCTGGTGCATTGCAGTCCAATGCAAGGGATGAAATTTCACCAGAGGACCTTCAAAAGAATGATGATGTTGATGACGATGATGGGGAGGAGGACTCTGATGCTTTTGAAGATACCGATGATGATCTGATGAGTGATGACTATGATTCAGATGCTAGTCAAAAGAGTCATGAGACACGTAAGAAAATCAAATGGTTTAAGAAGTTTTTTGAGATTTTGGATGGCTTGACTGTTGAACAGATAAATGAACCAGAAAGACAGTGGCATTGTCCAGCTTGCCAAGGTGGTCCTGGAGCTATTGATTGGTACAGAGGACTGCAGCCCTTGGTGACACATGCCAAAACAAAGGGATCTAAAAGGGTGAAGATTCACAGGGAGCTTGCTATACTTTTGGATGAGGAATTACGCAGAAGGGGTACTTCAGTAATTCCAGCTGGGGAAGTATTTGGAAAATGGAAAGGTTTGAAAGAAGAAGAAAAAGACCATGACATAGTTTGGCCCCCAATGGTTGTCATTCAGAATACAAAGCTTGAACAGGATGAAAATGATAAGTGGATAGGTATGGGTAACCAAGAACTTCTTGATTATTTTAGCACATATGATGCTGTGAGAGCACGACACTCTTATGGCCCACAGGGTCATCGTGGGATGAGTGTTTTGATATTTGAAGCCTCAGCTAGTGGCTATCTAGAGGCAGAGCGTCTCCACAAGCATTTTGCAGAGCAAGGAACTGATAAAGATTCTTGGTTCAGTCGCCCTATTTTATATCTCCCTGGGGGGAATCGCCAGCTCTATGGATACATGGCTACAAAAGAAGATATGGACTTTTTCAACAGACATTCCCAAGGTAAATCTAGACTCAAATATGACATAAGATCATATCAGGAGATGGTTGTACACCAAATTCGGCAAATGAATGAAGACAACCAACAGCTGCTCTATTTTAAGAACAAGGCTGTGAAAGGTGCAAAACACACAAAAGCTCTTGAAGAATCTATTGGTATAATGTCTGAGAAGCTGCGGAAGACAATGGAGGAAAATCGCATTGTGAGGAGGAGAACTAAAATGCAACATGAAGAGACCAAAGAAGAGATGTATATGCAAGAACAATTCTTCAAGGACCAGATCAAAATCATTCATGATTCAAGGGATGCAAAGGAAGAAGATTTCGAGAGGATGCAACAGGAGGAACGTGAGAAGGTGAAGCAGTCAAGTACTACTGGTCATGTGAATGCTGAGGAATATAGACTCAAGGTGGAAGAGTATCTGAAATTTGTTGAGGTCCAAGATAAAGAAATGGAGAACTTTGTTGCTGAAAAGGAGAAGCTGTTACATGCTCATGGCACGGGTTATGCTGCAATGAAGCGGAGGCATTGGGAGGAAGAAGTTCAGTATGAGCAGAAGTTTGATGAGGAATTGGCTAACCTCATGGAAAAGTACTCCCCGTCGTAG

>Glyma06g16960.3   sequence type=CDS   gene model=Glyma06g16960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTTCGAAAAGAGGGGGTGGGAGACCTGTAACCGTGGCTAACAATGATATGTCCAAAGGGAAAAGCATATCTGAAGCTCATCCAAAAGTTGAGCAGTTGACTCAGGGTATCGCTGACACTAAGCTAAACTCAGGACAAGATGATGGTGAGTGGGAGGTATATGCAAGGAAATCCAAGAACAAGGCTGGAAGCAGTGCTGCAAAACCATGGGCCCCCCCAGCCCATAATTCTAATCCTAGGGCATGGGGGAATGCAGAAATGGCTCAAAAGCCAGGCATCCGGGGTCATGGTGGACTTGGAAGATCTTCGGGAAATCCCTGGCAGACACAAAATGCTAACTTTAGGAGACCAGCTGGCAGAGGAAATGGAAGGCCTCAGTTAGCAACAAGTGGATATGAAAGCAACTATGTTCCAAATCCTGCAATTCGGCCTCCACTTGAGCATGGCTGGAACTGGCAATCCAGACCTGGTGCATTGCAGTCCAATGCAAGGGATGAAATTTCACCAGAGGACCTTCAAAAGAATGATGATGTTGATGACGATGATGGGGAGGAGGACTCTGATGCTTTTGAAGATACCGATGATGATCTGATGAGTGATGACTATGATTCAGATGCTAGTCAAAAGAGTCATGAGACACGTAAGAAAATCAAATGGTTTAAGAAGTTTTTTGAGATTTTGGATGGCTTGACTGTTGAACAGATAAATGAACCAGAAAGACAGTGGCATTGTCCAGCTTGCCAAGGTGGTCCTGGAGCTATTGATTGGTACAGAGGACTGCAGCCCTTGGTGACACATGCCAAAACAAAGGGATCTAAAAGGGTGAAGATTCACAGGGAGCTTGCTATACTTTTGGATGAGGAATTACGCAGAAGGGGTACTTCAGTAATTCCAGCTGGGGAAGTATTTGGAAAATGGAAAGGTTTGAAAGAAGAAGAAAAAGACCATGACATAGTTTGGCCCCCAATGGTTGTCATTCAGAATACAAAGCTTGAACAGGATGAAAATGATAAGTGGATAGGTATGGGTAACCAAGAACTTCTTGATTATTTTAGCACATATGATGCTGTGAGAGCACGACACTCTTATGGCCCACAGGGTCATCGTGGGATGAGTGTTTTGATATTTGAAGCCTCAGCTAGTGGCTATCTAGAGGCAGAGCGTCTCCACAAGCATTTTGCAGAGCAAGGAACTGATAAAGATTCTTGGTTCAGTCGCCCTATTTTATATCTCCCTGGGGGGAATCGCCAGCTCTATGGATACATGGCTACAAAAGAAGATATGGACTTTTTCAACAGACATTCCCAAGGTAAATCTAGACTCAAATATGACATAAGATCATATCAGGAGATGGTTGTACACCAAATTCGGCAAATGAATGAAGACAACCAACAGCTGCTCTATTTTAAGAACAAGGCTGTGAAAGGTGCAAAACACACAAAAGCTCTTGAAGAATCTATTGGTATAATGTCTGAGAAGCTGCGGAAGACAATGGAGGAAAATCGCATTGTGAGGAGGAGAACTAAAATGCAACATGAAGAGACCAAAGAAGAGATGTATATGCAAGAACAATTCTTCAAGGACCAGATCAAAATCATTCATGATTCAAGGGATGCAAAGGAAGAAGATTTCGAGAGGATGCAACAGGAGGAACGTGAGAAGGTGAAGCAGTCAAGTACTACTGGTCATGTGAATGCTGAGGAATATAGACTCAAGGTGGAAGAGTATCTGAAATTTGTTGAGGTCCAAGATAAAGAAATGGAGAACTTTGTTGCTGAAAAGGAGAAGCTGTTACATGCTCATGGCACGGGTTATGCTGCAATGAAGCGGAGGCATTGGGAGGAAGAAGTTCAGTATGAGCAGAAGTTTGATGAGGAATTGGCTAACCTCATGGAAAAGTACTCCCCGTCGTAG

Predicted protein sequences of Glyma06g16960

Limit To All Plant Sequences

>Glyma06g16960.2   sequence type=predicted peptide   gene model=Glyma06g16960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKRGGGRPVTVANNDMSKGKSISEAHPKVEQLTQGIADTKLNSGQDDGEWEVYARKSKNKAGSSAAKPWAPPAHNSNPRAWGNAEMAQKPGIRGHGGLGRSSGNPWQTQNANFRRPAGRGNGRPQLATSGYESNYVPNPAIRPPLEHGWNWQSRPGALQSNARDEISPEDLQKNDDVDDDDGEEDSDAFEDTDDDLMSDDYDSDASQKSHETRKKIKWFKKFFEILDGLTVEQINEPERQWHCPACQGGPGAIDWYRGLQPLVTHAKTKGSKRVKIHRELAILLDEELRRRGTSVIPAGEVFGKWKGLKEEEKDHDIVWPPMVVIQNTKLEQDENDKWIGMGNQELLDYFSTYDAVRARHSYGPQGHRGMSVLIFEASASGYLEAERLHKHFAEQGTDKDSWFSRPILYLPGGNRQLYGYMATKEDMDFFNRHSQGKSRLKYDIRSYQEMVVHQIRQMNEDNQQLLYFKNKAVKGAKHTKALEESIGIMSEKLRKTMEENRIVRRRTKMQHEETKEEMYMQEQFFKDQIKIIHDSRDAKEEDFERMQQEEREKVKQSSTTGHVNAEEYRLKVEEYLKFVEVQDKEMENFVAEKEKLLHAHGTGYAAMKRRHWEEEVQYEQKFDEELANLMEKYSPS*

>Glyma06g16960.3   sequence type=predicted peptide   gene model=Glyma06g16960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSKRGGGRPVTVANNDMSKGKSISEAHPKVEQLTQGIADTKLNSGQDDGEWEVYARKSKNKAGSSAAKPWAPPAHNSNPRAWGNAEMAQKPGIRGHGGLGRSSGNPWQTQNANFRRPAGRGNGRPQLATSGYESNYVPNPAIRPPLEHGWNWQSRPGALQSNARDEISPEDLQKNDDVDDDDGEEDSDAFEDTDDDLMSDDYDSDASQKSHETRKKIKWFKKFFEILDGLTVEQINEPERQWHCPACQGGPGAIDWYRGLQPLVTHAKTKGSKRVKIHRELAILLDEELRRRGTSVIPAGEVFGKWKGLKEEEKDHDIVWPPMVVIQNTKLEQDENDKWIGMGNQELLDYFSTYDAVRARHSYGPQGHRGMSVLIFEASASGYLEAERLHKHFAEQGTDKDSWFSRPILYLPGGNRQLYGYMATKEDMDFFNRHSQGKSRLKYDIRSYQEMVVHQIRQMNEDNQQLLYFKNKAVKGAKHTKALEESIGIMSEKLRKTMEENRIVRRRTKMQHEETKEEMYMQEQFFKDQIKIIHDSRDAKEEDFERMQQEEREKVKQSSTTGHVNAEEYRLKVEEYLKFVEVQDKEMENFVAEKEKLLHAHGTGYAAMKRRHWEEEVQYEQKFDEELANLMEKYSPS*

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