Glyma06g16950 - SoyBase

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Report for Sequence Feature Glyma06g16950

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13327792
stop:	13330984
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G08490	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:2745208-2747757 REVERSE LENGTH=849	SoyBase	E_val: 0	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0080156	GO-bp	Annotation by Michelle Graham. GO Biological Process: mitochondrial mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF84	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_D7M1C9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=2 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M1C9_ARALL	SoyBase	E_val: 0	ISS
UniRef100_I1KBU0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KBU0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16950

Paralog	Evidence	Comments
Glyma04g38110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g161600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16950

Limit To All Plant Sequences

>Glyma06g16950.1   sequence type=CDS   gene model=Glyma06g16950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGGACGCGATTTCAAGACGTGGGGTTCCGTCATTTGGAGCTTGTGTTTAGAAGCAAAACACAGTGAAGCCTTGTCCCTTTTCCACCACTGCTTAAAGGGTCATGAAGCTTTCAAACCAGATCACACAGTCCTTGCCGCAATTCTCAAGTCTTGTTCTGCCCTTTTGGCTCCCAACTTGGGTAGAACTCTGCATGGTTATGTTGTTAAACAAGGCCATGGTTCTTGCCATGTTACCAATAAAGGGTTGCTCAACATGTATGCCAAGTGTGGCATGCTTGTTGAGTGCCTCAAGCTGTTTGATCAGCTCAGTCACTGTGATCCCGTTGTTTGGAATATTGTTTTGTCTGGGTTTTCAGGGTCCAACAAATGTGATGCTGATGTGATGAGGGTGTTTAGGATGATGCATTCGAGCAGGGAGGCTCTGCCAAATTCTGTTACCGTTGCCACTGTCCTTCCTGTTTGTGCTCGTTTGGGGGATCTGGATGCTGGAAAGTGTGTACATGGTTATGTTATCAAGTCTGGTTTTGACCAAGACACCCTTGGTGGAAATGCTCTCGTGTCAATGTATGCAAAGTGTGGGCTGGTGTCTCATGATGCATATGCTGTCTTTGATAATATTGCCTACAAAGATGTTGTTTCGTGGAATGCAATGATCGCTGGCTTGGCTGAGAATAGGTTAGTGGAGGATGCTTTCTTGTTGTTCAGTTCAATGGTGAAAGGACCTACGCGGCCGAATTATGCAACAGTGGCAAATATTCTTCCTGTTTGTGCTTCGTTTGATAAGAGTGTTGCGTACTATTGTGGAAGGCAGATCCATTCTTATGTGCTGCAGTGGCCTGAATTGTCAGCTGATGTTTCTGTCTGTAATGCTTTGATTAGCCTCTACTTAAAAGTTGGGCAGATGAGGGAAGCAGAAGCTTTGTTTTGGACAATGGATGCAAGGGATTTGGTCACTTGGAATGCTTTTATCGCGGGATATACGTCAAATGGTGAGTGGTTAAAAGCACTGCATCTGTTTGGTAATTTAGCATCTCTAGAGACTTTATTGCCAGATTCTGTCACTATGGTCAGCATACTTCCAGCTTGTGCACAATTGAAAAACTTGAAGGTGGGGAAACAAATCCACGCATATATTTTCAGACATCCTTTCCTTTTTTATGATACAGCCGTGGGAAATGCTTTAGTTAGTTTCTATGCAAAATGTGGCTATACGGAAGAAGCGTATCATACTTTTTCTATGATATCCATGAAAGATTTGATTTCATGGAATTCTATTTTTGATGCCTTTGGAGAGAAGAGGCATCATTCAAGATTTCTCAGCTTGTTACATTGTATGCTTAAACTCAGAATTAGACCTGACTCAGTTACAATATTGGCCATAATCCGTTTGTGTGCCTCTCTTTTAAGAGTAGAAAAGGTTAAAGAAATACATAGCTATTCAATTAGAACTGGATCTTTATTAAGCAATACTGCGCCAACAGTTGGGAATGCAATACTTGATGCATATTCCAAATGTGGAAACATGGAGTACGCTAACAAAATGTTTCAGAATCTATCAGAAAAAAGGAATCTGGTCACATGCAATTCACTGATATCTGGTTATGTAGGTTTAGGATCACATCATGATGCAAATATGATATTTAGTGGGATGTCAGAGACTGACCTTACCACATGGAATCTTATGGTTCGAGTATATGCAGAAAATGATTGTCCTGAGCAAGCTCTTGGATTGTGCCACGAGTTACAAGCTCGAGGGATGAAGCCTGACACGGTGACTATCATGAGCCTCCTTCCAGTATGCACACAAATGGCATCAGTACACTTGCTGAGCCAGTGTCAAGGGTATATTATTCGGTCTTGTTTTAAGGATCTTCACCTTGAAGCTGCCCTCTTAGATGCATATGCCAAATGTGGTATCATAGGTCGTGCATATAAGATATTTCAATTGAGTGCTGAGAAGGATCTGGTTATGTTTACTGCTATGATTGGTGGGTATGCTATGCATGGCATGAGTGAAGAAGCACTTTGGATTTTTTCTCATATGCTCAAGTTGGGAATCCAGCCAGATCATATTATCTTTACTTCCATATTATCTGCTTGCAGTCATGCTGGCCGAGTAGACGAAGGACTGAAGATATTTTATTCGATAGAGAAACTTCATGGTATGAAACCAACTGTGGAACAGTATGCTTGTGTGGTGGATCTCCTAGCTCGAGGTGGCCGTATTAGTGAAGCATACTCTCTTGTGACCAGTTTGCCCATTGAAGCTAATGCTAATCTTTGGGGGACATTGCTTGGTGCCTGCAAAACCCATCATGAAGTAGAATTGGGGCGTATTGTAGCAAACCAACTCTTCAAAATTGAAGCTAACGATATAGGAAACTACATTGTATTGTCAAATTTGTACGCAGCAGATGCTAGATGGGATGGGGTAATGGAAGTTAGAAGGATGATGAGGAACAAAGATTTGAAAAAGCCTGCTGGATGCAGCTGGATTGAAGTTGAGAGAACAAATAACATTTTTGTGGCTGGAGACTGTTCCCACCCTCAAAGAAGCATTATTTACAGTACACTACAAACATTGGATCGACAAGTTAAAGAACCCGTGGAGTTTTTAGCTTAA

Predicted protein sequences of Glyma06g16950

Limit To All Plant Sequences

>Glyma06g16950.1   sequence type=predicted peptide   gene model=Glyma06g16950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLGRDFKTWGSVIWSLCLEAKHSEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAPNLGRTLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGFSGSNKCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDLTTWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMASVHLLSQCQGYIIRSCFKDLHLEAALLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMSEEALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYACVVDLLARGGRISEAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIVANQLFKIEANDIGNYIVLSNLYAADARWDGVMEVRRMMRNKDLKKPAGCSWIEVERTNNIFVAGDCSHPQRSIIYSTLQTLDRQVKEPVEFLA*

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