SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23630 | AT | Annotation by Michelle Graham. TAIR10: phosphate deficiency response 2 | chr5:7960756-7967644 REVERSE LENGTH=1179 | SoyBase | E_val: 0 | ISS |
| GO:0006812 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cation transport | SoyBase | N/A | ISS |
| GO:0006875 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular metal ion homeostasis | SoyBase | N/A | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0006891 | GO-bp | Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0010073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meristem maintenance | SoyBase | N/A | ISS |
| GO:0010152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen maturation | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0016036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0048867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: stem cell fate determination | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0015662 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0019829 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation-transporting ATPase activity | SoyBase | N/A | ISS |
| GO:0046872 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metal ion binding | SoyBase | N/A | ISS |
| KOG0209 | KOG | P-type ATPase | JGI | ISS | |
| PTHR24093 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24093:SF48 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00122 | PFAM | E1-E2 ATPase | JGI | ISS | |
| PF00702 | PFAM | haloacid dehalogenase-like hydrolase | JGI | ISS | |
| UniRef100_B9RHM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cation-transporting atpase 13a1, putative n=1 Tax=Ricinus communis RepID=B9RHM6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KBT2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBT2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g16860 not represented in the dataset |
Glyma06g16860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g38190 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g160800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g16860.1 sequence type=CDS gene model=Glyma06g16860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGAGTTTCCACGTCGGCGGCAAGGTCGTGGACCGAGTCGATTTGCTGAGGAAGAAGCAATGGCCATGGCGCCTCGACGTTTGGCCCTTCGCTATCCTCTATGGCGCGTGGCTTTCCGCGATTCTTCCCAGCCTCGACTTCGTCGACGCCGCCATTGTCTTCGGCGCGCTCGTCTCGCTTCACATCCTCGTTTTTCTCTTCACCGGTTGGTCCGTTGATTTCAAATGCTTTGCCCATTATAGCAAGGTTAAGAATATTGATCAGGCAGATTCGTGCAAGATTACTCCGGCGAAGTTCTCCGGTGCAAAAGAAGTTGTGCCGCTTCATTCACGGAAAAGTTCTGCAGGTTCTTCATCAGCGGTGGATTTGGAAGAGAACTACTTCGATTTTAGAAAGCAATGTTTTGTGTATTCAAAGGAGAAGGGGACTTTTTGCAAGCTTTCCTACCCTACCAAAGAAACATTTGGATATTATCTGAAGTGTAGTGGCCATGGCTCTGAAGCTAAAGTTCTCGCTGCTACTGAGAAATGGGGGCGGAATGTATTTGATTATCCTCAGCCAACATTTCAGAAATTGATGAAAGAGCACTGCATGGAGCCTTTTTTCGTATTTCAGGTTTTCTGTGTGGGTCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTGTTTATGTTTGAGTCAACCATGGCAAAAAGTCGGTTGAAAACTCTAACTGAGTTAAGACGTGTTAGAGTGGATAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTAAAACTCTCTGGTACAGAGCTTTTGCCTGGGGATGTTGTCTCCATAGGTCGCTCTTCTGGTCAGAATGGGGAGGAGAAGTCTGTACCAGCAGACATGCTTCTATTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTGACAGGCGAGTCTACCCCTCAATGGAAGATTTCAATCGCGGGTAGGGGGATGGAGGAGACATTGTCAGCAAGGCAAGATAAAAACCATGTGTTATTTGGTGGAACAAAAATATTGCAGCACACTCCAGATAAGAGTTTTCCTCTAAAAACACCTGATGGTGGCTGCTTGGCTGTTATCTTGAGAACGGGGTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCTAATAGCTGGGAAAGTGGATTCTTCATTTTATTCCTGGTTGTATTTGCTCTTATTGCTGCTGGTTATGTGCTTGTTAAGGGGCTAGAAGATCCCACAAGGAGCAAGTATAAACTTATACTAAGTTGTTCACTTATTGTTACTTCTGTGATTCCTCCTGAGTTACCAATGGAATTATCAATAGCTGTTAATACTTCCCTGATTGCACTGGCACGGCGTGGCATTTTTTGCACAGAGCCTTTTCGAATACCATTTGCTGGAAAGGTTGATATATGCTGTTTTGACAAGACAGGGACACTTACTTCTGATGACATGGAATTTTCTGGAATTGTTGGGTTGAATGGAACTACAGATTTGGAATCTGATACGAGTAAAGTGCCTCTGCGAACTGTAGAAATCCTGGCTTCTTGCCATGCATTGGTATTTGTTGAGAATAAGCTGGTTGGTGATCCTCTTGAGAAGGCTGCACTTAAGGGAATTGACTGGAGTTATAAATCTGATGACAAGGCTGTTCCAAAAAAGGGAAATGGCCATCCTGTCCAAATTGTTCATCGGTACCATTTTGCATCTCACTTAAAACGAATGGCAGTTGTTGTTCGCATTCAGGAGGAATTTTTCGCCTTTGTGAAGGGTGCCCCAGAAGTTATACAAGATAGGCTCGTTGATATACCGCCATCATATGTTGAGACCTACAAAAAATACACACGTCAAGGGTCTCGTGTTCTTGCTCTGGCTTACAAGTCTCTTGCTGACATGACAGTCAGTGAAGCTAGAAGCTTGGATAGGGGTATAGTGGAGAGTGGACTTACTTTTGCGGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTGTTTTAGCTGAATTGAAAGAATCCTCGCACGACTTAGTGATGATTACTGGTGACCAAGCGTTGACAGCTTGCCATGTTGCTAGCCAAGTTCATATTATATCAAAACCTACATTAATCCTTGGCCCGGCACAAAATGGTGAGGGATATAATTGGATGTCCCCTGATGAGACTGAAAACATTCGCTACAGTGAGAAAGAGGTCGAGTCTTTATCAGAGACTCATGATCTCTGTATTGGAGGTGATTGCATTGAGATGTTGCAACAGACATCAGCTCATCTTCGGGTCATTCCCTATGTGAAGGTTTTTGCTAGAGTTGCCCCCGAGCAAAAAGAACTTATCATGACCACTTTCAAAATGGTGGGACGGTTAACTTTGATGTGTGGGGATGGTACCAATGATGTTGGAGCTTTGAAACAGGCCCATGTAGGAATTGCTCTTCTGAATGCATTGCCTCCAACTCAAAGTGGAAACTCCTCTTCAGATTCGTCTAAGGAAGAAGGTTCAAAATCTGGCAAGCAAAAGAAATCTAAACCTGCAGCGGACACATCTGGGAAGACTGCTGGTGAAGGCACTTCAAAAGCCAAAGTTGCTTCAAAATCAGATTCCGCTAGTCACTCATCTGGTAACCGTCATCAGGCAGCCGTTGAGATGCAACGGCAGAAGCTTAAAAAGATGATGGACGAGCTTAATGAGGAAGGAGATGGTCGTGCACCCATTGTCAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACTGCTAAGCATGCATCTGTTGCTCCCACCACTGACATAATTCGTCAAGGTCGGAGTACCCTAGTGACAACCCTCCAGATGTTTAAAATTCTGGGTCTCAACTGTCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTCAAGCTAGGTGACATACAAGCCACAATAAGTGGTATCTTCACTGCTGCATTTTTCCTCTTTATCTCACATGCACGCCCTCTTCCCACTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCCCTCTTGGGACAATTTTCTATTCACCTGCTTTTCCTGATCTCATCTGTGAAAGAAGCTGAAAAACACATGCCAGATGAATGCATTGAACCTGATGCAGATTTTCATCCCAACCTGGTGAATACTGTTTCCTATATGGTGAGCATGATGCTTCAGGTGGCCACATTTGCTGTGAACTATATGGGTCATCCCTTCAACCAGAGTATTTCTGAAAACAGGCCGTTCCGGTATGCACTTGTTGCTGCTGTTGTTTTCTTTACTGTGATCACATCAGATCTATTCAGGGACTTGAATGACTGGTTGAAGTTAGTGCCATTGCCTGTGGGATTAAGGGATAAACTATTACTTTGGGCGTTTCTAATGTTTTTGGTTTGCTATTCGTGGGAGAGACTGTTGAGGTGGGCCTTCCCTGGTAAGATCCCAGCTTGGAAGAAGCGACAACGGCTTGCTGTATCTAATTTAGAAAAGAAACAGGTCTAA
>Glyma06g16860.1 sequence type=predicted peptide gene model=Glyma06g16860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSSFHVGGKVVDRVDLLRKKQWPWRLDVWPFAILYGAWLSAILPSLDFVDAAIVFGALVSLHILVFLFTGWSVDFKCFAHYSKVKNIDQADSCKITPAKFSGAKEVVPLHSRKSSAGSSSAVDLEENYFDFRKQCFVYSKEKGTFCKLSYPTKETFGYYLKCSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTELLPGDVVSIGRSSGQNGEEKSVPADMLLLAGSVIVNEAILTGESTPQWKISIAGRGMEETLSARQDKNHVLFGGTKILQHTPDKSFPLKTPDGGCLAVILRTGFETSQGKLMRTILFSTERVTANSWESGFFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGIVGLNGTTDLESDTSKVPLRTVEILASCHALVFVENKLVGDPLEKAALKGIDWSYKSDDKAVPKKGNGHPVQIVHRYHFASHLKRMAVVVRIQEEFFAFVKGAPEVIQDRLVDIPPSYVETYKKYTRQGSRVLALAYKSLADMTVSEARSLDRGIVESGLTFAGFVVFNCPIRSDSATVLAELKESSHDLVMITGDQALTACHVASQVHIISKPTLILGPAQNGEGYNWMSPDETENIRYSEKEVESLSETHDLCIGGDCIEMLQQTSAHLRVIPYVKVFARVAPEQKELIMTTFKMVGRLTLMCGDGTNDVGALKQAHVGIALLNALPPTQSGNSSSDSSKEEGSKSGKQKKSKPAADTSGKTAGEGTSKAKVASKSDSASHSSGNRHQAAVEMQRQKLKKMMDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDIQATISGIFTAAFFLFISHARPLPTLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVKEAEKHMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENRPFRYALVAAVVFFTVITSDLFRDLNDWLKLVPLPVGLRDKLLLWAFLMFLVCYSWERLLRWAFPGKIPAWKKRQRLAVSNLEKKQV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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