SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63660 | AT | Annotation by Michelle Graham. TAIR10: Scorpion toxin-like knottin superfamily protein | chr5:25485692-25486062 FORWARD LENGTH=73 | SoyBase | E_val: 5.00E-24 | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| PF00304 | PFAM | Gamma-thionin family | JGI | ISS | |
| UniRef100_Q39894 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Seed-specific low molecular weight sulfur-rich protein n=1 Tax=Glycine max RepID=Q39894_SOYBN | SoyBase | E_val: 3.00E-36 | ISS |
| UniRef100_Q39894 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Seed-specific low molecular weight sulfur-rich protein n=1 Tax=Glycine max RepID=Q39894_SOYBN | SoyBase | E_val: 3.00E-36 | ISS |
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Glyma06g16800 not represented in the dataset |
Glyma06g16800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g160300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g16800.2 sequence type=transcript gene model=Glyma06g16800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GAGACCAGCTTTTGCTTCTTTGTGAACATGGAGATGAGGAAATCATGTGGCTTCTTCTTCTTGCTCCTCCTCCTTGTCTTTGCTTCCCCAGAGGTGGTGGTGCAGACGGAGGGAAGAGTGTGTGAGTCACAAAGCCACGGGTTCCATGGTTTGTGTAATAGAGACCACAACTGTGCTTTGGTCTGCAGGAACGAAGGTTTCTCCGGTGGCAGGTGCAAAGGCTTCCGCCGCCGCTGCTTTTGCACCAGGATTTGTTGAGATCTCATCAAACACTACTCTTGCCATGCAAATTAATAAATCATAGCTAGGCCAAATAAATTGCATCTACTCTTTATCCATTTGGGAGCTAGCTACCACAACCAACTCATACTTGGTCATTGGATTGCTTCCCTTTGGCTTCTGCCTTTGCTTATCTCTCTACCTCTACGTCTTGTTCAGGGTTTATGTTTCGTAATGATTAATGAATGCTGTTTAATTAACTAGTATATTATTTTAGTCTTCTAACTAATTAACAAGTCACAACATTCCATTATCTGTCATTTGCAGTTTTTATTTATAATAAAAAAAT
>Glyma06g16800.1 sequence type=CDS gene model=Glyma06g16800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATGAGGAAATCATGTGGCTTCTTCTTCTTGCTCCTCCTCCTTGTCTTTGCTTCCCAGGTGGTGGTGCAGACGGAGGGAAGAGTGTGTGAGTCACAAAGCCACGGGTTCCATGGTTTGTGTAATAGAGACCACAACTGTGCTTTGGTCTGCAGGAACGAAGGTTTCTCCGGTGGCAGGTGCAAAGGCTTCCGCCGCCGCTGCTTTTGCACCAGGATTTGTTGA >Glyma06g16800.2 sequence type=CDS gene model=Glyma06g16800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGATGAGGAAATCATGTGGCTTCTTCTTCTTGCTCCTCCTCCTTGTCTTTGCTTCCCCAGAGGTGGTGGTGCAGACGGAGGGAAGAGTGTGTGAGTCACAAAGCCACGGGTTCCATGGTTTGTGTAATAGAGACCACAACTGTGCTTTGGTCTGCAGGAACGAAGGTTTCTCCGGTGGCAGGTGCAAAGGCTTCCGCCGCCGCTGCTTTTGCACCAGGATTTGTTGA
>Glyma06g16800.1 sequence type=predicted peptide gene model=Glyma06g16800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMRKSCGFFFLLLLLVFASQVVVQTEGRVCESQSHGFHGLCNRDHNCALVCRNEGFSGGRCKGFRRRCFCTRIC* >Glyma06g16800.2 sequence type=predicted peptide gene model=Glyma06g16800 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEMRKSCGFFFLLLLLVFASPEVVVQTEGRVCESQSHGFHGLCNRDHNCALVCRNEGFSGGRCKGFRRRCFCTRIC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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