Glyma06g16790 - SoyBase

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Report for Sequence Feature Glyma06g16790

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13195434
stop:	13199537
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16790

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72160	AT	Annotation by Michelle Graham. TAIR10: Sec14p-like phosphatidylinositol transfer family protein \| chr1:27153823-27155609 REVERSE LENGTH=490	SoyBase	E_val: 7.00E-169	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
KOG1471	KOG	Phosphatidylinositol transfer protein SEC14 and related proteins	JGI		ISS
PTHR23324	Panther	SEC14 RELATED PROTEIN	JGI		ISS
PTHR23324:SF4	Panther	SEC14 CYTOSOLIC FACTOR-RELATED	JGI		ISS
PF00650	PFAM	CRAL/TRIO domain	JGI		ISS
PF03765	PFAM	CRAL/TRIO, N-terminus	JGI		ISS
UniRef100_G7LGG8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Patellin-5 n=1 Tax=Medicago truncatula RepID=G7LGG8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBS7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBS7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16790

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16790

Paralog	Evidence	Comments
Glyma04g38261	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16790 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g160200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16790

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16790

Limit To All Plant Sequences

>Glyma06g16790.1   sequence type=CDS   gene model=Glyma06g16790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAGGAAGTTCCAAAGACAAGCACAACTCCAGAGGAGGTGGTGGTCTCTGACGTGGCACCTGCTGACGAGAAACCAGACACCACCACCGACGTTGTTGTTCCCGTAGAGAAAGACGCACAACAAGAACAAGAAACCTCGCCAGAGAAGGAGAAAGAGAACGTTCCCGAAACAGCTGAAACCGAGTCCGAGGTTGTTTCAAAACCAAGCGGTGACGACAACGTTCCTGAATCCGGTTCTTTCAAGGAGGAAAGCACCATTGTTTCCGACCTACCTGAAACCGAGAAAAAGGCTCTGCAAGAACTCAAACAACTCATTCAAGAAGCGCTCAACAACCACGAGTTATCCGAGGTACCTACAACTAACCCTCCCAAAGATGAAAAACCCGAACACAAGGAAGAACAGAAACCCGTGGAGGAAGAAAAGAAGGAACATGCTGCTGACGTGGCAGAAGAGACAGAAAAAGAAGCTGCAGAAGTTACGGTAACCGAAACTGAGGTTGTTGAAGAGAAAGTGGCGGTTTCTGCTTCTGCTGACGAGGATGGAGCGAAAACCGTTGAAGCCATCGAAGAAAGCGTTGTGTCTGTGACAGTGACTGTCTCCGAGGAACCAAAGGTGGAAGCTGTTTCACTTTCTGCTTCTCCCGAAGAGGTTTGCATTTGGGGTGTGCCGCTTCTCGCTGATGACAGAAGCGACGTGATTCTGTTGAAGTTTCTTCGTGCTCGGGACTTCAAGGTGAAGGAGGCATTGGCGATGATAAAGAGCACGATTCGGTGGAGGAAGGAGTTCAAGATGGAGGAGCTGTTGGAGGAGGATTTGGGTGGTGATGGTTTGGAGAAGGCGGTGTACATGCATGGGTTCGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGTGAGTTTCAGAACAAGGAGTTGTACAAGAAGAGTTTCTCTGATGAGGAGAAGAGGTATAGGTTTCTCAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGATTTTAACCCTGGTGGGATATGCACCATTGTTCAGGTTAATGACCTCAGGAATTCTCCTGGCCCTTCTAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAGCTGCTTCAGGATAACTATCCTGAGTTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGTCCCTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGACCTTCCAAATCAGCTGAGACCCTTTTGAGGTACATTGCTGCAGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGAGAGTTCGGAATTTCGGATGCTGTTACAGAAATTACAGTGAGGTCAGCAGCAAAACATACCGTGGAGTTTCCAGTTACTGAGAACTCGCTACTCTCTTGGGAGCTCAGAGTAATAGGGTGGGACGTGAGCTACGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGCTATACTGTGATCATCCAGAAGGCCAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGGTCAAGCCTTCTTCTGACTGA

Predicted protein sequences of Glyma06g16790

Limit To All Plant Sequences

>Glyma06g16790.1   sequence type=predicted peptide   gene model=Glyma06g16790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEVPKTSTTPEEVVVSDVAPADEKPDTTTDVVVPVEKDAQQEQETSPEKEKENVPETAETESEVVSKPSGDDNVPESGSFKEESTIVSDLPETEKKALQELKQLIQEALNNHELSEVPTTNPPKDEKPEHKEEQKPVEEEKKEHAADVAEETEKEAAEVTVTETEVVEEKVAVSASADEDGAKTVEAIEESVVSVTVTVSEEPKVEAVSLSASPEEVCIWGVPLLADDRSDVILLKFLRARDFKVKEALAMIKSTIRWRKEFKMEELLEEDLGGDGLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKSFSDEEKRYRFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLRNSPGPSKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVRSAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSD*

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