Glyma06g16770 - SoyBase

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Report for Sequence Feature Glyma06g16770

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13180482
stop:	13183253
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03795	AT	Annotation by Michelle Graham. TAIR10: Exostosin family protein \| chr5:1007554-1010373 REVERSE LENGTH=518	SoyBase	E_val: 5.00E-156	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
KOG1021	KOG	Acetylglucosaminyltransferase EXT1/exostosin 1	JGI		ISS
PTHR11062	Panther	EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED	JGI		ISS
PTHR11062:SF1	Panther	EXOSTOSIN RELATED	JGI		ISS
PF03016	PFAM	Exostosin family	JGI		ISS
UniRef100_B9SF22	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SF22_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KBS5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KBS5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16770

Paralog	Evidence	Comments
Glyma04g38280	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g160000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16770

Limit To All Plant Sequences

>Glyma06g16770.2   sequence type=CDS   gene model=Glyma06g16770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGATATCATCATTCTCCATTTCCAACTTCAACTTCTTCACATTAATTGAATTGAGATCAGCGTGGGGAGAACCAACTTCTTCTTTGGATACAGAAAACAAAAGTGCTTCAATATTACATGATGATGATGAGGGAGAGGCTACTCCATCTCCAACTGCATTTGACTCAGATCATCATCATGGTCCTCATCAAGAAATATTCAATGAGGGTGATGAAAAGCTTGACACCAAGTTTAAGCATAATGGGTACCTTAGAGATCACAAGTACACCAAGTTAGGAAGTATTGAAGCAAGATTGGCTAAAGCAAGGTATTCCATCAGAGAAGCTAGCAAAATTCCAAATTTTACACCGACTCTCCAAGATCCAGACTATGTTCCTCAAGGTTCAATTTACAGAAACGCCAATGCATTTCATAGGAGTTACCTAGAGATGGAAAAGGTGTTCAAGATTTTTGTGTATGAAGAAGGGGAGCCACCGTTGTTCCACAATGGTCTAAGCAAAGACATATATGCCACTGAGGGAAGATTCATACATGAAATGGAAAAGGGGAGGTACTATCGTACTTATGATCCAGATGAAGCTTTTGTGTATTATCTGCCCTTTAGTGTGGTTATGTTGGTCGAATATGTGTATGATCGTGGCTCCAATTATAACCTAGACCCCCTTGGCCTTGTTGTAAAAGACTACATACAGATTATAGCCCATAAACATCCCTTCTGGAATCGATCCCTTGGCCATGATCATGTCATGCTCTCTTGCCACGATTGGGGTCCGCTTGTATCTAGTTACGTGGATCACTTGTACAACAATGCCATAAGGGTTCTATGCAACGCAAATACATCTGAAGGATTCAAGCCTGCAAAGGATGTCTCATTTCCTGAGATTAAACTTATTAAGGGGGAAGTCAAAGGTCTTGGAGGGTATCCCCCATCTCAAAGGACCATCCTTGCTTTCTTTGCAGGCCACCTGCATGGCTATATAAGATACCTACTCCTAAGTACATGGAAAAACAAAGACCAAGATATGCAAATATATGAGGAACTTCCTGAGGGAATCTCTTACTACACAAAGCTTAGAAGCAGCAAGTTTTGTCTGTGTCCAAGTGGTTATGAAGTAGCTAGTCCCAGAGTAGTGGAAGCAATATTTGCAGAATGTGTGCCAGTTCTGATTTCTGATAGCTATGTTCCACCCTTTAGTGATGTTTTGAATTGGAATTCATTTTCAGTTCAAGTGAATGTGAAGGACATTCCAAATATCAAAAGGATACTCATGGAAATTTCAGAAAAGCAGTACTTGAGGATGCACAAGAGGGTGAAACAAGTGCAACGGCATTTTGTGCCTAATGAGCCCCCAAAGAGGTATGATATGTTCCATATGACTGTCCATTCCATTTGGCTCAGGCGGTTGAATATAAATATTCAAGATCAGTAA

Predicted protein sequences of Glyma06g16770

Limit To All Plant Sequences

>Glyma06g16770.2   sequence type=predicted peptide   gene model=Glyma06g16770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
QISSFSISNFNFFTLIELRSAWGEPTSSLDTENKSASILHDDDEGEATPSPTAFDSDHHHGPHQEIFNEGDEKLDTKFKHNGYLRDHKYTKLGSIEARLAKARYSIREASKIPNFTPTLQDPDYVPQGSIYRNANAFHRSYLEMEKVFKIFVYEEGEPPLFHNGLSKDIYATEGRFIHEMEKGRYYRTYDPDEAFVYYLPFSVVMLVEYVYDRGSNYNLDPLGLVVKDYIQIIAHKHPFWNRSLGHDHVMLSCHDWGPLVSSYVDHLYNNAIRVLCNANTSEGFKPAKDVSFPEIKLIKGEVKGLGGYPPSQRTILAFFAGHLHGYIRYLLLSTWKNKDQDMQIYEELPEGISYYTKLRSSKFCLCPSGYEVASPRVVEAIFAECVPVLISDSYVPPFSDVLNWNSFSVQVNVKDIPNIKRILMEISEKQYLRMHKRVKQVQRHFVPNEPPKRYDMFHMTVHSIWLRRLNINIQDQ*

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