Glyma06g16750 - SoyBase

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Report for Sequence Feature Glyma06g16750

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13171261
stop:	13177307
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G30390	AT	Annotation by Michelle Graham. TAIR10: ferrochelatase 2 \| chr2:12951242-12953985 REVERSE LENGTH=512	SoyBase	E_val: 0	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0006783	GO-bp	Annotation by Michelle Graham. GO Biological Process: heme biosynthetic process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019243	GO-bp	Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019288	GO-bp	Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	SoyBase	N/A	ISS
GO:0019760	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate metabolic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004325	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ferrochelatase activity	SoyBase	N/A	ISS
KOG1321	KOG	Protoheme ferro-lyase (ferrochelatase)	JGI		ISS
PTHR11108	Panther	FERROCHELATASE	JGI		ISS
PF00762	PFAM	Ferrochelatase	JGI		ISS
UniRef100_I1KBS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ferrochelatase n=1 Tax=Glycine max RepID=I1KBS4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KBS4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ferrochelatase n=1 Tax=Glycine max RepID=I1KBS4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16750

Paralog	Evidence	Comments
Glyma04g38291	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g159900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16750

Limit To All Plant Sequences

>Glyma06g16750.1   sequence type=CDS   gene model=Glyma06g16750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTCTCCAATTCATGCCCCTTCTTCATCGGCATCTTCTTCCTCCTATATGCTTCGTCCTTCACCATGCCTCACTCATGCTTCTCGTAACCTCAAGTGTCCTATGTTGTTACCACAGGCAATTTGTACCTCTCAAAAGAAGTACCATTGCTTTGGAGCTAATGTGGAGGCGTCTTTTAACACAAATCCCTTGAAAAATTACACATCAGTCAGATGTTCTCCATGGTGGTCTGAAACACAATCCTTGGTTTCTAACAAAACACTCAACAAACAGTTGTTCACAGTAGAATCTTTAGCAACTTCAACAGCTCAAGATGTTTCTGATACAACTCTTATTGGTGATGATAAGATTGGTGTGTTACTGTTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAGCCTTTTTTGTTTAACCTTTTTGCTGACCCGGATATAATACGTTTGCCAAGGATATTTAGTTTTTTTCAAAAGCCATTAGCTCAATTTGTATCTGTCGCAAGAGCCCCAAAGAGCAAGGAAGGCTATGCTTCAATTGGCGGTGGCTCTCCTCTCAGACGCATGACTGATGAACAGGCCGAAGAGTTGAAAAAATCTCTTTGGGAAAAGAATGTCCCAGCTGAAGTGTATGTTGGCATGCGTTACTGGCATCCTTTCACTGAAGAAGCTATTGAGCAGATTAAAAGGGATGGAATTACAAAGCTTGTTATTCTTCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCCTACGTCTACTGGAGAGTATATTCCGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTAATACCATCATGGTATCAACGTGAAGGATACATAAAGGCCATGGCAAATTTAATTGAAAAAGAGTTGAAGAGTTTTGACTGCCCTGAGGAGGTCATGATATTCTTTAGTGCACATGGGGTGCCTCTTGCTTATGTTGAAGAGGCTGGTGATCCATACAAGGCTGAGATGGAGGAATGTGTGGAGTTGATCATGGAAGAGCTTGAGACACGAAAGATAACTAATGCATGCACCCTTGCTTATCAGAGTAGAGTTGGACCAGTGGAATGGTTAAGACCCTATACAGACGAGACAATAATTGAACTTGGAAGAAAGGGAGTGAAAAGTCTGCTCGCCGTTCCAATTAGCTTCGTCAGTGAGCATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCAGGTATAGAAAACTGGGGCCGTGTTCCTGCTCTAGGATGCGAACCTACCTTCATTTCTGATTTGGCAGATGCCGTTATTGATAGTCTCCCATATGTTGGTGCCATGGCAGCTTCAGACCTTGAAGCTCGACAGTCCCTCGTTCCATTGGGCAGTGTAGAAGAGTTATTGGCAGCATATGATTCGCAACGCAGGGAGTTGCCACCACCAGTTATAGTGTGGGAATGGGGTTGGACAAAAAGTGCTGAAACTTGGAATGGAAGAGTAGCTATGCTGGCTGTGCTTCTTCTTTTGTTTTTTGAATTCACTGCAGACAAGGGTTTGCTGCATCAGATGGGAATATGGCCCTCGCTTAGATGA

Predicted protein sequences of Glyma06g16750

Limit To All Plant Sequences

>Glyma06g16750.1   sequence type=predicted peptide   gene model=Glyma06g16750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSPIHAPSSSASSSSYMLRPSPCLTHASRNLKCPMLLPQAICTSQKKYHCFGANVEASFNTNPLKNYTSVRCSPWWSETQSLVSNKTLNKQLFTVESLATSTAQDVSDTTLIGDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFFQKPLAQFVSVARAPKSKEGYASIGGGSPLRRMTDEQAEELKKSLWEKNVPAEVYVGMRYWHPFTEEAIEQIKRDGITKLVILPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIEKELKSFDCPEEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVELIMEELETRKITNACTLAYQSRVGPVEWLRPYTDETIIELGRKGVKSLLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPTFISDLADAVIDSLPYVGAMAASDLEARQSLVPLGSVEELLAAYDSQRRELPPPVIVWEWGWTKSAETWNGRVAMLAVLLLLFFEFTADKGLLHQMGIWPSLR*

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