Report for Sequence Feature Glyma06g16740
Feature Type: gene_model
Chromosome: Gm06
Start: 13163591
stop: 13170443
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g16740
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G63640 AT
Annotation by Michelle Graham. TAIR10: ENTH/VHS/GAT family protein | chr5:25478935-25481221 FORWARD LENGTH=447
SoyBase E_val: 5.00E-152 ISS
GO:0006886 GO-bp
Annotation by Michelle Graham. GO Biological Process: intracellular protein transport
SoyBase N/A ISS
GO:0006891 GO-bp
Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport
SoyBase N/A ISS
GO:0005622 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: intracellular
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005795 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi stack
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0008565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein transporter activity
SoyBase N/A ISS
KOG1087
KOG
Cytosolic sorting protein GGA2/TOM1
JGI ISS
PTHR13856 Panther
VHS DOMAIN CONTAINING PROTEIN FAMILY
JGI ISS
PTHR13856:SF27 Panther
TARGET OF MYB1 RELATED (TOM1 - RELATED)
JGI ISS
PF00790 PFAM
VHS domain
JGI ISS
PF03127 PFAM
GAT domain
JGI ISS
UniRef100_G7LGG3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Class E vacuolar protein-sorting machinery protein HSE1 n=2 Tax=Medicago truncatula RepID=G7LGG3_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KBS3 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBS3_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g16740
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g16740
Paralog Evidence Comments
Glyma04g38320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g16740 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g159800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g16740
Transcripts of Glyma06g16740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g16740.2 sequence type=transcript gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTGTCCCCAACCTTAAAATACAGTGCCCCACTTGCGAATTTCACAATCATCATACTCCAAAAAAGGTTGAAGTTAAGAAAAAAGAGAAAAAGCAAGAGAATTGGTTTGGTGGCACTTGATCTTCCGTGGTGAAATGAAATGCTGAAGCTCTTTAGGGCCTATCAGTGCTTCCTTGGCTTCTTCCTCGTCATCTCTATCGTTGTATCCGTATTCACAGTTTTTCTTGGTCTCCGTTCATGCTATTCATAAAGATCATTATCTAGAAAAAGATGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGGGAAGCAAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGCAAACACTCCAATACTCAACTCTTTGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAGCCTCACCTAAACATGAAGCAGTTGCTCAGCCAGCAGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTGGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCAGTCGATTTGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGCAAGGGAAAGGCTTGTGCAAGGCCTGAACACGAGGAGACTGAAACTGACATCCCTTGCTTGGGTTTGCTTGGAGAGAGACTCAATCGTCCTCTAATACGACCACTCTCGATAGAACCTCCAACTCGAGAAGCTGATACTCGATCTCCACCTGTTGTGATCCCACCATCTCGAGAAGCTGATACCCGATCTCCACCTGCTGTGATTCCACCTCCACGGCCAAAACAGAATGGGCAGGTTCCTCACCCTGTAGCAATTCCACCACCACCTGCAAAACACATTGAGAGGGAGAGGTTTTTTCTGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGGGGCCTCTCTTTACATAGTCGTAACGGCAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGTGACTGATCTCTTGACAACAGGATCTCTTTTAGCTTTTCTTTTCATTTCTGTCTAAATTTGGAGTTGGTATTATTTAAGCTGTGAGGAATTGGTGATTTCTCATTTAGTCTTGGTAGTGTGGAGATGGGAGAGAAGAAGTGAAGCCACATCTGCTTCAGTTTATAAATTACTTGTAATTATGTTCTCAGATTATGTGCCATGACCTGAGGTTTGTAAGTTTCAGTTGCAAATGTTATAACTGATTATGGTATTTTTGTTTTCCTGATTTCTTGAAACTACTGTTTTTGTTCTTATCAACCTTTGTAAAACCTTCAAACACCACTTTCCCTTGTTTGTCTATGCTTTTTTTATTTGGCTAAATTGTAATTTTGATCCTTTTTAATTCTTGATCCGGAATTTTGGTC
>Glyma06g16740.3 sequence type=transcript gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTGTCCCCAACCTTAAAATACAGTGCCCCACTTGCGAATTTCACAATCATCATACTCCAAAAAAGGTTGAAGTTAAGAAAAAAGAGAAAAAGCAAGAGAATTGGTTTGGTGGCACTTGATCTTCCGTGGTGAAATGAAATGCTGAAGCTCTTTAGGGCCTATCAGTGCTTCCTTGGCTTCTTCCTCGTCATCTCTATCGTTGTATCCGTATTCACAGATCATTATCTAGAAAAAGATGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGGGAAGCAAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGCAAACACTCCAATACTCAACTCTTTGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAGCCTCACCTAAACATGAAGCAGTTGCTCAGCCAGCAGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTGGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCAGTCGATTTGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGCAAGGGAAAGGCTTGTGCAAGGCCTGAACACGAGGAGACTGAAACTGACATCCCTTGCTTGGGTTTGCTTGGAGAGAGACTCAATCGTCCTCTAATACGACCACTCTCGATAGAACCTCCAACTCGAGAAGCTGATACTCGATCTCCACCTGTTGTGATCCCACCATCTCGAGAAGCTGATACCCGATCTCCACCTGCTGTGATTCCACCTCCACGGCCAAAACAGAATGGGCAGGTTCCTCACCCTGTAGCAATTCCACCACCACCTGCAAAACACATTGAGAGGGAGAGGTTTTTTCTGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGGGGCCTCTCTTTACATAGTCGTAACGGCAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGTGACTGATCTCTTGACAACAGGATCTCTTTTAGCTTTTCTTTTCATTTCTGTCTAAATTTGGAGTTGGTATTATTTAAGCTGTGAGGAATTGGTGATTTCTCATTTAGTCTTGGTAGTGTGGAGATGGGAGAGAAGAAGTGAAGCCACATCTGCTTCAGTTTATAAATTACTTGTAATTATGTTCTCAGATTATGTGCCATGACCTGAGGTTTGTAAGTTTCAGTTGCAAATGTTATAACTGATTATGGTATTTTTGTTTTCCTGATTTCTTGAAACTACTGTTTTTGTTCTTATCAACCTTTGTAAAACCTTCAAACACCACTTTCCCTTGTTTGTCTATGCTTTTTTTATTTGGCTAAATTGTAATTTTGATCCTTTTTAATTCTTGATCCGGAATTTTGGTC
Coding sequences of Glyma06g16740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g16740.1 sequence type=CDS gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGGGAAGCAAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGCAAACACTCCAATACTCAACTCTTTGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAGCCTCACCTAAACATGAAGCAGTTGCTCAGCCAGCAGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTGGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCAGTCGATTTGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGCAAGGGAAAGGCTTGTGCAAGGCCTGAACACGAGGAGACTGAAACTGACATCCCTTGCTTGGGTTTGCTTGGAGAGAGACTCAATCGTCCTCTAATACGACCACTCTCGATAGAACCTCCAACTCGAGAAGCTGATACTCGATCTCCACCTGTTGTGATCCCACCATCTCGAGAAGCTGATACCCGATCTCCACCTGCTGTGATTCCACCTCCACGGCCAAAACAGAATGGGCAGGTTCCTCACCCTGTAGCAATTCCACCACCACCTGCAAAACACATTGAGAGGGAGAGGTTTTTTCTGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGGGGCCTCTCTTTACATAGTCGTAACGGCAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGTGACTGA
>Glyma06g16740.2 sequence type=CDS gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGGGAAGCAAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGCAAACACTCCAATACTCAACTCTTTGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAGCCTCACCTAAACATGAAGCAGTTGCTCAGCCAGCAGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTGGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCAGTCGATTTGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGCAAGGGAAAGGCTTGTGCAAGGCCTGAACACGAGGAGACTGAAACTGACATCCCTTGCTTGGGTTTGCTTGGAGAGAGACTCAATCGTCCTCTAATACGACCACTCTCGATAGAACCTCCAACTCGAGAAGCTGATACTCGATCTCCACCTGTTGTGATCCCACCATCTCGAGAAGCTGATACCCGATCTCCACCTGCTGTGATTCCACCTCCACGGCCAAAACAGAATGGGCAGGTTCCTCACCCTGTAGCAATTCCACCACCACCTGCAAAACACATTGAGAGGGAGAGGTTTTTTCTGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGGGGCCTCTCTTTACATAGTCGTAACGGCAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGTGACTGA
>Glyma06g16740.3 sequence type=CDS gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGGCTGAGCTAGTCAATGGTGCAACAAGCGAGAAGCTGGCTGAAACTGATTGGACAAAAAATATTGAAATTTGTGAGCTAGTTGCTCATGATAAAAGGGAAGCAAGAGATGTTGTTAAAGCTATAAAAAAGAGACTAGGAAGCAAACACTCCAATACTCAACTCTTTGCTGTCATGTTGCTGGAAATGTTGATGAACAATATTGGAGAGCATATTCATGAGCAGGTGATTGATACTGGAATTATTCCTATTCTAGTAAAAATTGTGAAGAAAAAGTCTGATTTGCCTGTGAGGGAGCGGATATTTCTCCTACTAGATGCCACACAAACATCCCTTGGTGGTGCATCTGGAAAGTTTCCACAGTATTATAATGCATATTATGATTTGGTGAGTGCTGGAGTGCAGTTTGCTCAAAGGGATCAAGTGGTCCAATCAAATAATCCTAGTTCACAACCTAGTAGGACTAGTAATGTACCAAACAGAGAGCAAGCCTCACCTAAACATGAAGCAGTTGCTCAGCCAGCAGAGTCCCAGACTGTCCCTGAATCTAGCATTATTCAAAAGGCTGGCAATGCATTAGAAGTACTAAAAGAGGTCCTTGATGTTGTTGATGCTCAAAATCCTCAGGGAGCAAGGGATGAATTCACCCTTGACCTTGTAGAACAATGTTCTTTTCAAAAACAAAGGGTTATGCATCTTGTGATGGCTTCCCGAGATGAAAGGATAGTTTCTCGAGCAATTGAATTGAATGAGCAACTTCAGAAAGTTCTTGCAAGACATGATGACCTTCTTGCTGGCAGAGCTACAACAACTGCCAGTCGATTTGACCATGAAGAAGCAGAGGAGGAAGAGGAGCCTGAACAGTTAGTCCGAAGATTACGCAAGGGAAAGGCTTGTGCAAGGCCTGAACACGAGGAGACTGAAACTGACATCCCTTGCTTGGGTTTGCTTGGAGAGAGACTCAATCGTCCTCTAATACGACCACTCTCGATAGAACCTCCAACTCGAGAAGCTGATACTCGATCTCCACCTGTTGTGATCCCACCATCTCGAGAAGCTGATACCCGATCTCCACCTGCTGTGATTCCACCTCCACGGCCAAAACAGAATGGGCAGGTTCCTCACCCTGTAGCAATTCCACCACCACCTGCAAAACACATTGAGAGGGAGAGGTTTTTTCTGGAAAACAAGGATGGTTCTAATTTGTCTGGCCACATGAGGGGCCTCTCTTTACATAGTCGTAACGGCAGCAGCTCTCGCAGTGGAAGCTTTGATTTTAGTGACTGA
Predicted protein sequences of Glyma06g16740
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g16740.1 sequence type=predicted peptide gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAELVNGATSEKLAETDWTKNIEICELVAHDKREARDVVKAIKKRLGSKHSNTQLFAVMLLEMLMNNIGEHIHEQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFAQRDQVVQSNNPSSQPSRTSNVPNREQASPKHEAVAQPAESQTVPESSIIQKAGNALEVLKEVLDVVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATTTASRFDHEEAEEEEEPEQLVRRLRKGKACARPEHEETETDIPCLGLLGERLNRPLIRPLSIEPPTREADTRSPPVVIPPSREADTRSPPAVIPPPRPKQNGQVPHPVAIPPPPAKHIERERFFLENKDGSNLSGHMRGLSLHSRNGSSSRSGSFDFSD*
>Glyma06g16740.2 sequence type=predicted peptide gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAELVNGATSEKLAETDWTKNIEICELVAHDKREARDVVKAIKKRLGSKHSNTQLFAVMLLEMLMNNIGEHIHEQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFAQRDQVVQSNNPSSQPSRTSNVPNREQASPKHEAVAQPAESQTVPESSIIQKAGNALEVLKEVLDVVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATTTASRFDHEEAEEEEEPEQLVRRLRKGKACARPEHEETETDIPCLGLLGERLNRPLIRPLSIEPPTREADTRSPPVVIPPSREADTRSPPAVIPPPRPKQNGQVPHPVAIPPPPAKHIERERFFLENKDGSNLSGHMRGLSLHSRNGSSSRSGSFDFSD*
>Glyma06g16740.3 sequence type=predicted peptide gene model=Glyma06g16740 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAELVNGATSEKLAETDWTKNIEICELVAHDKREARDVVKAIKKRLGSKHSNTQLFAVMLLEMLMNNIGEHIHEQVIDTGIIPILVKIVKKKSDLPVRERIFLLLDATQTSLGGASGKFPQYYNAYYDLVSAGVQFAQRDQVVQSNNPSSQPSRTSNVPNREQASPKHEAVAQPAESQTVPESSIIQKAGNALEVLKEVLDVVDAQNPQGARDEFTLDLVEQCSFQKQRVMHLVMASRDERIVSRAIELNEQLQKVLARHDDLLAGRATTTASRFDHEEAEEEEEPEQLVRRLRKGKACARPEHEETETDIPCLGLLGERLNRPLIRPLSIEPPTREADTRSPPVVIPPSREADTRSPPAVIPPPRPKQNGQVPHPVAIPPPPAKHIERERFFLENKDGSNLSGHMRGLSLHSRNGSSSRSGSFDFSD*