Glyma06g16665 - SoyBase

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Report for Sequence Feature Glyma06g16665

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13069703
stop:	13073557
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16665

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G01170	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07730.1); Has 211 Blast hits to 211 proteins in 60 species: Archae - 0; Bacteria - 22; Metazoa - 50; Fungi - 11; Plants - 77; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). \| chr4:499497-500831 FORWARD LENGTH=444	SoyBase	E_val: 3.00E-19	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_F6H0H5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=F6H0H5_VITVI	SoyBase	E_val: 3.00E-32	ISS
UniRef100_Q9S7X5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F17A17.7 protein n=1 Tax=Arabidopsis thaliana RepID=Q9S7X5_ARATH	SoyBase	E_val: 3.00E-13	ISS

Expression Patterns of Glyma06g16665

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g16665 not represented in the dataset	Glyma06g16665 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g16665 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g159000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16665

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g16665

Limit To All Plant Sequences

>Glyma06g16665.2   sequence type=transcript   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGTCACTTGTCATTCTTCAGCAGAAGCTGAGCTGAGGAGTTTGCTGCAATCTAACCTCCGTTCCACACACGGATTATGAGAGAGTGAGTTACCACATTTCATTGAGGCATGTAATTCTTCACTTCAGAACCATTTGAGGAACGGAATGGTACCTTCTCCAACAACGAAGCAAAATGCATTGGCACCAAAGAAGAAGCTACACAGAAACAGAAGATGGGACTGTGAATATGATATATACATCCACTTGCAAGAGAAGAATAGAGTCCTTAAAAGTGAAACTGAAAAGTCAAATTACTTCCATAACCTTTTGCAGGACTTCGATGTTAAGGATCGAAAGGGTGATTCGGAGTTGGTGCAATTCATGAATGGTTTTTACGGCAATATTGTACAGTCTCGATTGTTTCATCTTGATCAAAACCCTAACAACATAGAGAACACTGCTGAAGAAAATGGCACAAATGATGATGATGATGATGATGATGTGATGGTGGATCCCCAGCATATGTATTTCATGGATCATGTGAGGTCTCATGGAAAATCTTATGTACTTGCTATCCCTGAGGATGGTGTCTTTGTAGTGTATGAGCCTGATCAATCATCAATTCCTGAGAATACAGCTACCATCACAACGGATTATTCAAATCATGTTTCAAATGAAGAGGTTAATGTGTGCTTAGACACAGAGATGCATGTAAATGTTGATGATAGCAATCGTGTTGTGAAGCATAGGGGTAGGAAGCCAAAAGGTGCAAAACTCTCTGCTGCTACGAATGGTAATGTTAAAGGAAGTGATGTGGCTTCAAAATCAAAGCCAAAGAAACATGTATATAACTTGAAGGGTAGGCGCAGGAGTAAGAGGCTGAAACTGAAAGCCCCACCTGAGTCACCTGGCTCAAGAACATTGGTGATTGAAGACAGTGATGACGAAGCAGAAGATCTAACAAGGTCCATGCGAGGCCAGATTGTGGAACATTGTTGGCAAGAATATAAATATAATGAAGCCAATGCAAGTACACTTTTCAGAGAAAAACTCATGGAAGAACTTAAGGCACCTTACTGTGAGGAAGAGTACAAGAGGCTTTTACATGACATTACTATTCAAAAGCCGATCCAACACCATAGAGACCTGCGTGGAGGTATCAAAATCTATGAGAAACCTGATCTTGGAAAGTCTTTTCTTGGTTATCATGTTGATCTTGCTATGAAGATAAAAACAGTTCGTGATGATCATTTCAGAGTTCTGAATCTCATGCGTGGATTTTTCTATTGGTTGAAAAATTTATCACATGAAGGGGCATTCCCGCCATGGAGAGATCCATCGTGTTTGAATGTACTGCCACAACAATTGGAAGGATAGTTGTTTGCTTTTAATTTTCTGTCATGATGCAACTTTTTATTTTTGTTTTGAGTGATGCAATTGATTTAAACTTTACTGAACATTGCTTAGGAGGAGTGCTGCCACATGTGATACCTCGTGGGATATAAACAAGTTTGTCTCTTTGATGTGTTTCTTTTCCTTCATTTTATTTCTTTTATATTTTTGGTTTACCTCGCCTTAAATCGAACATGATAAATATGATTCCCACGGATTAGTTGGTTGAGTAAGGTGTGTAAGTTGTTATAAACACCTGGTACCTGTCTTCGATTTTCACGGATAAAAAAACAAACATGATTACTAACATGTTTATGGGTGTATCACAAGTTGTTCTCGTGGCATATTGTTGTTGCAACATTTACATTCTCTTTTTCATATATTTCTGCCAACCGATCTATGTTTCTGTGTTGCTGCATTATGAGTAATATCAGTTGTGAATGAACCTGACTTCTTTACTTGATGAAGATAAGGGTATATTTGTAAGAAGATTCAAAGACTCACCTTTCTCTAGATCCATAAGCTATTATGAGTAGCTTCAAATCAGACTTGTGTCAGTTCACCTAAATCACATTTTTGAGGAAAGTGCCAAACATATTTGGTTAATGGAAAAATTAAATTTTGCCATATATTCAATGTAGAG

>Glyma06g16665.3   sequence type=transcript   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCTTTGTTCTTTTTCATGATCACATTCACATTAGATTAAACACATCAACTTTCTCAAATATTTGATGTTCCTGTCGAATAGTGGTCGAATTCTATGGTTTCCATAGCCCTGCTCCTATTACTTTTTTTGTTCTTATTATGAGAGAGTGAGTTACCACATTTCATTGAGGCATGTAATTCTTCACTTCAGAACCATTTGAGGAACGGAATGGTACCTTCTCCAACAACGAAGCAAAATGCATTGGCACCAAAGAAGAAGCTACACAGAAACAGAAGATGGGACTGTGAATATGATATATACATCCACTTGCAAGAGAAGAATAGAGTCCTTAAAAGTGAAACTGAAAAGTCAAATTACTTCCATAACCTTTTGCAGGACTTCGATGTTAAGGATCGAAAGGGTGATTCGGAGTTGGTGCAATTCATGAATGGTTTTTACGGCAATATTGTACAGTCTCGATTGTTTCATCTTGATCAAAACCCTAACAACATAGAGAACACTGCTGAAGAAAATGGCACAAATGATGATGATGATGATGATGATGTGATGGTGGATCCCCAGCATATGTATTTCATGGATCATGTGAGGTCTCATGGAAAATCTTATGTACTTGCTATCCCTGAGGATGGTGTCTTTGTAGTGTATGAGCCTGATCAATCATCAATTCCTGAGAATACAGCTACCATCACAACGGATTATTCAAATCATGTTTCAAATGAAGAGGTTAATGTGTGCTTAGACACAGAGATGCATGTAAATGTTGATGATAGCAATCGTGTTGTGAAGCATAGGGGTAGGAAGCCAAAAGGTGCAAAACTCTCTGCTGCTACGAATGGTAATGTTAAAGGAAGTGATGTGGCTTCAAAATCAAAGCCAAAGAAACATGTATATAACTTGAAGGGTAGGCGCAGGAGTAAGAGGCTGAAACTGAAAGCCCCACCTGAGTCACCTGGCTCAAGAACATTGGTGATTGAAGACAGTGATGACGAAGCAGAAGATCTAACAAGGTCCATGCGAGGCCAGATTGTGGAACATTGTTGGCAAGAATATAAATATAATGAAGCCAATGCAAGTACACTTTTCAGAGAAAAACTCATGGAAGAACTTAAGGCACCTTACTGTGAGGAAGAGTACAAGAGGCTTTTACATGACATTACTATTCAAAAGCCGATCCAACACCATAGAGACCTGCGTGGAGGTATCAAAATCTATGAGAAACCTGATCTTGGAAAGTCTTTTCTTGGTTATCATGTTGATCTTGCTATGAAGATAAAAACAGTTCGTGATGATCATTTCAGAGTTCTGAATCTCATGCGTGGATTTTTCTATTGGTTGAAAAATTTATCACATGAAGGGGCATTCCCGCCATGGAGAGATCCATCGTGTTTGAATGTACTGCCACAACAATTGGAAGGATAGTTGTTTGCTTTTAATTTTCTGTCATGATGCAACTTTTTATTTTTGTTTTGAGTGATGCAATTGATTTAAACTTTACTGAACATTGCTTAGGAGGAGTGCTGCCACATGTGATACCTCGTGGGATATAAACAAGTTTGTCTCTTTGATGTGTTTCTTTTCCTTCATTTTATTTCTTTTATATTTTTGGTTTACCTCGCCTTAAATCGAACATGATAAATATGATTCCCACGGATTAGTTGGTTGAGTAAGGTGTGTAAGTTGTTATAAACACCTGGTACCTGTCTTCGATTTTCACGGATAAAAAAACAAACATGATTACTAACATGTTTATGGGTGTATCACAAGTTGTTCTCGTGGCATATTGTTGTTGCAACATTTACATTCTCTTTTTCATATATTTCTGCCAACCGATCTATGTTTCTGTGTTGCTGCATTATGAGTAATATCAGTTGTGAATGAACCTGACTTCTTTACTTGATGAAGATAAGGGTATATTTGTAAGAAGATTCAAAGACTCACCTTTCTCTAGATCCATAAGCTATTATGAGTAGCTTCAAATCAGACTTGTGTCAGTTCACCTAAATCACATTTTTGAGGAAAGTGCCAAACATATTTGGTTAATGGAAAAATTAAATTTTGCCATATATTCAATGTAGAG

Coding sequences of Glyma06g16665

Limit To All Plant Sequences

>Glyma06g16665.1   sequence type=CDS   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTTCTCCAACAACGAAGCAAAATGCATTGGCACCAAAGAAGAAGCTACACAGAAACAGAAGATGGGACTGTGAATATGATATATACATCCACTTGCAAGAGAAGAATAGAGTCCTTAAAAGTGAAACTGAAAAGTCAAATTACTTCCATAACCTTTTGCAGGACTTCGATGTTAAGGATCGAAAGGGTGATTCGGAGTTGGTGCAATTCATGAATGGTTTTTACGGCAATATTGTACAGTCTCGATTGTTTCATCTTGATCAAAACCCTAACAACATAGAGAACACTGCTGAAGAAAATGGCACAAATGATGATGATGATGATGATGATGTGATGGTGGATCCCCAGCATATGTATTTCATGGATCATGTGAGGTCTCATGGAAAATCTTATGTACTTGCTATCCCTGAGGATGGTGTCTTTGTAGTGTATGAGCCTGATCAATCATCAATTCCTGAGAATACAGCTACCATCACAACGGATTATTCAAATCATGTTTCAAATGAAGAGGTTAATGTGTGCTTAGACACAGAGATGCATGTAAATGTTGATGATAGCAATCGTGTTGTGAAGCATAGGGGTAGGAAGCCAAAAGGTGCAAAACTCTCTGCTGCTACGAATGGTAATGTTAAAGGAAGTGATGTGGCTTCAAAATCAAAGCCAAAGAAACATGTATATAACTTGAAGGGTAGGCGCAGGAGTAAGAGGCTGAAACTGAAAGCCCCACCTGAGTCACCTGGCTCAAGAACATTGGTGATTGAAGACAGTGATGACGAAGCAGAAGATCTAACAAGGTCCATGCGAGGCCAGATTGTGGAACATTGTTGGCAAGAATATAAATATAATGAAGCCAATGCAAGTACACTTTTCAGAGAAAAACTCATGGAAGAACTTAAGGCACCTTACTGTGAGGAAGAGTACAAGAGGCTTTTACATGACATTACTATTCAAAAGCCGATCCAACACCATAGAGACCTGCGTGGAGGTATCAAAATCTATGAGAAACCTGATCTTGGAAAGTCTTTTCTTGGTTATCATGTTGATCTTGCTATGAAGATAAAAACAGTTCGTGATGATCATTTCAGAGTTCTGAATCTCATGCGTGGATTTTTCTATTGGTTGAAAAATTTATCACATGAAGGGGCATTCCCGCCATGGAGAGATCCATCGTGTTTGAATGTACTGCCACAACAATTGGAAGGATAG

>Glyma06g16665.2   sequence type=CDS   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTTCTCCAACAACGAAGCAAAATGCATTGGCACCAAAGAAGAAGCTACACAGAAACAGAAGATGGGACTGTGAATATGATATATACATCCACTTGCAAGAGAAGAATAGAGTCCTTAAAAGTGAAACTGAAAAGTCAAATTACTTCCATAACCTTTTGCAGGACTTCGATGTTAAGGATCGAAAGGGTGATTCGGAGTTGGTGCAATTCATGAATGGTTTTTACGGCAATATTGTACAGTCTCGATTGTTTCATCTTGATCAAAACCCTAACAACATAGAGAACACTGCTGAAGAAAATGGCACAAATGATGATGATGATGATGATGATGTGATGGTGGATCCCCAGCATATGTATTTCATGGATCATGTGAGGTCTCATGGAAAATCTTATGTACTTGCTATCCCTGAGGATGGTGTCTTTGTAGTGTATGAGCCTGATCAATCATCAATTCCTGAGAATACAGCTACCATCACAACGGATTATTCAAATCATGTTTCAAATGAAGAGGTTAATGTGTGCTTAGACACAGAGATGCATGTAAATGTTGATGATAGCAATCGTGTTGTGAAGCATAGGGGTAGGAAGCCAAAAGGTGCAAAACTCTCTGCTGCTACGAATGGTAATGTTAAAGGAAGTGATGTGGCTTCAAAATCAAAGCCAAAGAAACATGTATATAACTTGAAGGGTAGGCGCAGGAGTAAGAGGCTGAAACTGAAAGCCCCACCTGAGTCACCTGGCTCAAGAACATTGGTGATTGAAGACAGTGATGACGAAGCAGAAGATCTAACAAGGTCCATGCGAGGCCAGATTGTGGAACATTGTTGGCAAGAATATAAATATAATGAAGCCAATGCAAGTACACTTTTCAGAGAAAAACTCATGGAAGAACTTAAGGCACCTTACTGTGAGGAAGAGTACAAGAGGCTTTTACATGACATTACTATTCAAAAGCCGATCCAACACCATAGAGACCTGCGTGGAGGTATCAAAATCTATGAGAAACCTGATCTTGGAAAGTCTTTTCTTGGTTATCATGTTGATCTTGCTATGAAGATAAAAACAGTTCGTGATGATCATTTCAGAGTTCTGAATCTCATGCGTGGATTTTTCTATTGGTTGAAAAATTTATCACATGAAGGGGCATTCCCGCCATGGAGAGATCCATCGTGTTTGAATGTACTGCCACAACAATTGGAAGGATAG

>Glyma06g16665.3   sequence type=CDS   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTACCTTCTCCAACAACGAAGCAAAATGCATTGGCACCAAAGAAGAAGCTACACAGAAACAGAAGATGGGACTGTGAATATGATATATACATCCACTTGCAAGAGAAGAATAGAGTCCTTAAAAGTGAAACTGAAAAGTCAAATTACTTCCATAACCTTTTGCAGGACTTCGATGTTAAGGATCGAAAGGGTGATTCGGAGTTGGTGCAATTCATGAATGGTTTTTACGGCAATATTGTACAGTCTCGATTGTTTCATCTTGATCAAAACCCTAACAACATAGAGAACACTGCTGAAGAAAATGGCACAAATGATGATGATGATGATGATGATGTGATGGTGGATCCCCAGCATATGTATTTCATGGATCATGTGAGGTCTCATGGAAAATCTTATGTACTTGCTATCCCTGAGGATGGTGTCTTTGTAGTGTATGAGCCTGATCAATCATCAATTCCTGAGAATACAGCTACCATCACAACGGATTATTCAAATCATGTTTCAAATGAAGAGGTTAATGTGTGCTTAGACACAGAGATGCATGTAAATGTTGATGATAGCAATCGTGTTGTGAAGCATAGGGGTAGGAAGCCAAAAGGTGCAAAACTCTCTGCTGCTACGAATGGTAATGTTAAAGGAAGTGATGTGGCTTCAAAATCAAAGCCAAAGAAACATGTATATAACTTGAAGGGTAGGCGCAGGAGTAAGAGGCTGAAACTGAAAGCCCCACCTGAGTCACCTGGCTCAAGAACATTGGTGATTGAAGACAGTGATGACGAAGCAGAAGATCTAACAAGGTCCATGCGAGGCCAGATTGTGGAACATTGTTGGCAAGAATATAAATATAATGAAGCCAATGCAAGTACACTTTTCAGAGAAAAACTCATGGAAGAACTTAAGGCACCTTACTGTGAGGAAGAGTACAAGAGGCTTTTACATGACATTACTATTCAAAAGCCGATCCAACACCATAGAGACCTGCGTGGAGGTATCAAAATCTATGAGAAACCTGATCTTGGAAAGTCTTTTCTTGGTTATCATGTTGATCTTGCTATGAAGATAAAAACAGTTCGTGATGATCATTTCAGAGTTCTGAATCTCATGCGTGGATTTTTCTATTGGTTGAAAAATTTATCACATGAAGGGGCATTCCCGCCATGGAGAGATCCATCGTGTTTGAATGTACTGCCACAACAATTGGAAGGATAG

Predicted protein sequences of Glyma06g16665

Limit To All Plant Sequences

>Glyma06g16665.1   sequence type=predicted peptide   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPSPTTKQNALAPKKKLHRNRRWDCEYDIYIHLQEKNRVLKSETEKSNYFHNLLQDFDVKDRKGDSELVQFMNGFYGNIVQSRLFHLDQNPNNIENTAEENGTNDDDDDDDVMVDPQHMYFMDHVRSHGKSYVLAIPEDGVFVVYEPDQSSIPENTATITTDYSNHVSNEEVNVCLDTEMHVNVDDSNRVVKHRGRKPKGAKLSAATNGNVKGSDVASKSKPKKHVYNLKGRRRSKRLKLKAPPESPGSRTLVIEDSDDEAEDLTRSMRGQIVEHCWQEYKYNEANASTLFREKLMEELKAPYCEEEYKRLLHDITIQKPIQHHRDLRGGIKIYEKPDLGKSFLGYHVDLAMKIKTVRDDHFRVLNLMRGFFYWLKNLSHEGAFPPWRDPSCLNVLPQQLEG*

>Glyma06g16665.2   sequence type=predicted peptide   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPSPTTKQNALAPKKKLHRNRRWDCEYDIYIHLQEKNRVLKSETEKSNYFHNLLQDFDVKDRKGDSELVQFMNGFYGNIVQSRLFHLDQNPNNIENTAEENGTNDDDDDDDVMVDPQHMYFMDHVRSHGKSYVLAIPEDGVFVVYEPDQSSIPENTATITTDYSNHVSNEEVNVCLDTEMHVNVDDSNRVVKHRGRKPKGAKLSAATNGNVKGSDVASKSKPKKHVYNLKGRRRSKRLKLKAPPESPGSRTLVIEDSDDEAEDLTRSMRGQIVEHCWQEYKYNEANASTLFREKLMEELKAPYCEEEYKRLLHDITIQKPIQHHRDLRGGIKIYEKPDLGKSFLGYHVDLAMKIKTVRDDHFRVLNLMRGFFYWLKNLSHEGAFPPWRDPSCLNVLPQQLEG*

>Glyma06g16665.3   sequence type=predicted peptide   gene model=Glyma06g16665   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPSPTTKQNALAPKKKLHRNRRWDCEYDIYIHLQEKNRVLKSETEKSNYFHNLLQDFDVKDRKGDSELVQFMNGFYGNIVQSRLFHLDQNPNNIENTAEENGTNDDDDDDDVMVDPQHMYFMDHVRSHGKSYVLAIPEDGVFVVYEPDQSSIPENTATITTDYSNHVSNEEVNVCLDTEMHVNVDDSNRVVKHRGRKPKGAKLSAATNGNVKGSDVASKSKPKKHVYNLKGRRRSKRLKLKAPPESPGSRTLVIEDSDDEAEDLTRSMRGQIVEHCWQEYKYNEANASTLFREKLMEELKAPYCEEEYKRLLHDITIQKPIQHHRDLRGGIKIYEKPDLGKSFLGYHVDLAMKIKTVRDDHFRVLNLMRGFFYWLKNLSHEGAFPPWRDPSCLNVLPQQLEG*

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