Glyma06g16660 - SoyBase

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Report for Sequence Feature Glyma06g16660

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13064849
stop:	13067708
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G13340	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:4277939-4279397 REVERSE LENGTH=242	SoyBase	E_val: 9.00E-34	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_A2Q3T8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribosomal protein S7 n=1 Tax=Medicago truncatula RepID=A2Q3T8_MEDTR	SoyBase	E_val: 1.00E-41	ISS
UniRef100_I1KBR4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBR4_SOYBN	SoyBase	E_val: 2.00E-146	ISS

Expression Patterns of Glyma06g16660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g16660 not represented in the dataset	Glyma06g16660 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16660

Paralog	Evidence	Comments
Glyma04g38390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g158900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g16660

Limit To All Plant Sequences

>Glyma06g16660.3   sequence type=transcript   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGATTAACTCAAACACACATAGAAAAATACCCAACCCAGATCGTTGGATTAATTCAAATTGGAAGATGGCTGGTACCTACCCTTTTCCAAGAACTAGTTATGTCGGTTGAGTAATTTTATTTTCGGAAAAAATTAAAAAATAGAGAGAGGAAATTGATTGGTGGTGCAAGGCATAAAGAGGAGAATTGGTGGGGATAGGCAAAGGAGAAGAAGATACTCTCCATCCACCGTTTCTCATCATCGCCACTCCAGAACTTCCCACAGGCGCCGCCGAAGGCACAGAACCTCTTCCTCCCCCTCTCTTTCACGCAGCCCCACTCCCAAGCCCAAGAAAGATCAAAAGAAAAGGTTAATTTCATTCTTCTCTATTGGCTTTGCTGAAGGAAGTTCAACTTGTTAAATATGATGAACAATGGCTGCCTCCATTATCTCCTCTTGCTCTAGAAACTTGTTAGAGAGCAAGCGTCACCACGAGGAAGAGTTGAAACTATTGGAAGAAGAGACTGCAAGAAGACTGGAAGAAGCAATTCGAAAAAATGTTGAGGAAAAGCTTAACACAGAGGAAGTCAAGTTAGAAATAGAAAGGCGCGTAGCAGAGGGAGTGAAGAAACTGTTTGATGATGTTGAAGCTCAACTTGAAAAAGGAAAGGAAGATGCTCTTACTGAAGCTAGAAGGAAAGAAGAACAAGCTCGTAAAGAAAGAGAAGAACTGGACCTGATGCTTGAAGAGAATAGGAGGAGAGTGGAAGAATCTCAGAGAAAAGAAGCTCTAGAGCAGCAAAGAAAGGAAGAGGAACGACAAAGGGAATTAGAGATGATTCAGAGACAGAAAGAAGAGGCTGCTCTGAGAAAGAAGCTGGAGGATGAAGAAGAACATGCGAATCGAATTAATTCTTTGGGTAAGAACAAATCTAGGCCCAAGTCTTATGGTTTCTAATTATTCTAATTACTATGTGTTATGTGATATCATTTTGTACCCCAAATTATTTTGTACCCTTATGTGGAACCATTATCTTCAATGAAAGATTTGATATTCCTATGTTTGAGCTTGCAACCTGGTTTATTAAAAGGCCTAAGAAAATTGAAAATGTTATTTTCTCTTCAAGTTACTATGATGTTGAAATTAATTTGCTTTACATTACGAAATGGCTACCTGTTT

>Glyma06g16660.4   sequence type=transcript   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGATTAACTCAAACACACATAGAAAAATACCCAACCCAGATCGTTGGATTAATTCAAATTGGAAGATGGCTGGTACCTACCCTTTTCCAAGAACTAGTTATGTCGGTTGAGTAATTTTATTTTCGGAAAAAATTAAAAAATAGAGAGAGGAAATTGATTGGTGGTGCAAGGCATAAAGAGGAGAATTGGTGGGGATAGGCAAAGGAGGTGAGTAGTGAATAGGGTTTTTGATTGATTGAGAATTGAAATTGATGGATCGCAGTGTGTCACGCTCACGCTCTCCTTCCCGCAGAAGAAGATACTCTCCATCCACCGTTTCTCATCATCGCCACTCCAGAACTTCCCACAGGCGCCGCCGAAGGCACAGAACCTCTTCCTCCCCCTCTCTTTCACGCAGCCCCACTCCCAAGCCCAAGAAAGATCAAAAGAAAAGGTTAATTTCATTCTTCTCTATTGGCTTTGCTGAAGGAAGTTCAACTTGTTAAATATGATGAACAATGGCTGCCTCCATTATCTCCTCTTGCTCTAGAAACTTGTTAGAGAGCAAGCGTCACCACGAGGAAGAGTTGAAACTATTGGAAGAAGAGACTGCAAGAAGACTGGAAGAAGCAATTCGAAAAAATGTTGAGGAAAAGCTTAACACAGAGGAAGTCAAGTTAGAAATAGAAAGGCGCGTAGCAGAGGGAGTGAAGAAACTGTTTGATGATGTTGAAGCTCAACTTGAAAAAGGAAAGGAAGATGCTCTTACTGAAGCTAGAAGGAAAGAAGAACAAGCTCGTAAAGAAAGAGAAGAACTGGACCTGATGCTTGAAGAGAATAGGAGGAGAGTGGAAGAATCTCAGAGAAAAGAAGCTCTAGAGCAGCAAAGAAAGGAAGAGGAACGACAAAGGGAATTAGAGATGATTCAGAGACAGAAAGAAGAGGCTGCTCTGAGAAAGAAGCTGGAGGATGAAGAAGAACATGCGAATCGAATTAATTCTTTGGGTAAGAACAAATCTAGGCCCAAGTCTTATGGTTTCTAATTATTCTAATTACTATGTGTTATGTGATATCATTTTGTACCCCAAATTATTTTGTACCCTTATGTGGAACCATTATCTTCAATGAAAGATTTGATATTCCTATGTTTGAGCTTGCAACCTGGTTTATTAAAAGGCCTAAGAAAATTGAAAATGTTATTTTCTCTTCAAGTTACTATGATGTTGAAATTAATTTGCTTTACATTACGAAATGGCTACCTGTTT

Coding sequences of Glyma06g16660

Limit To All Plant Sequences

>Glyma06g16660.1   sequence type=CDS   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATCGCAGTGTGTCACGCTCACGCTCTCCTTCCCGCAGAAGAAGATACTCTCCATCCACCGTTTCTCATCATCGCCACTCCAGAACTTCCCACAGGCGCCGCCGAAGGCACAGAACCTCTTCCTCCCCCTCTCTTTCACGCAGCCCCACTCCCAAGCCCAAGAAAGATCAAAAGAAAAGCAAGCGTCACCACGAGGAAGAGTTGAAACTATTGGAAGAAGAGACTGCAAGAAGACTGGAAGAAGCAATTCGAAAAAATGTTGAGGAAAAGCTTAACACAGAGGAAGTCAAGTTAGAAATAGAAAGGCGCGTAGCAGAGGGAGTGAAGAAACTGTTTGATGATGTTGAAGCTCAACTTGAAAAAGGAAAGGAAGATGCTCTTACTGAAGCTAGAAGGAAAGAAGAACAAGCTCGTAAAGAAAGAGAAGAACTGGACCTGATGCTTGAAGAGAATAGGAGGAGAGTGGAAGAATCTCAGAGAAAAGAAGCTCTAGAGCAGCAAAGAAAGGAAGAGGAACGACAAAGGGAATTAGAGATGATTCAGAGACAGAAAGAAGAGGCTGCTCTGAGAAAGAAGCTGGAGGATGAAGAAGAACATGCGAATCGAATTAATTCTTTGGGTAAGAACAAATCTAGGCCCAAGTCTTATGGTTTCTAA

>Glyma06g16660.3   sequence type=CDS   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTCCATTATCTCCTCTTGCTCTAGAAACTTGTTAGAGAGCAAGCGTCACCACGAGGAAGAGTTGAAACTATTGGAAGAAGAGACTGCAAGAAGACTGGAAGAAGCAATTCGAAAAAATGTTGAGGAAAAGCTTAACACAGAGGAAGTCAAGTTAGAAATAGAAAGGCGCGTAGCAGAGGGAGTGAAGAAACTGTTTGATGATGTTGAAGCTCAACTTGAAAAAGGAAAGGAAGATGCTCTTACTGAAGCTAGAAGGAAAGAAGAACAAGCTCGTAAAGAAAGAGAAGAACTGGACCTGATGCTTGAAGAGAATAGGAGGAGAGTGGAAGAATCTCAGAGAAAAGAAGCTCTAGAGCAGCAAAGAAAGGAAGAGGAACGACAAAGGGAATTAGAGATGATTCAGAGACAGAAAGAAGAGGCTGCTCTGAGAAAGAAGCTGGAGGATGAAGAAGAACATGCGAATCGAATTAATTCTTTGGGTAAGAACAAATCTAGGCCCAAGTCTTATGGTTTCTAA

>Glyma06g16660.4   sequence type=CDS   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCTCCATTATCTCCTCTTGCTCTAGAAACTTGTTAGAGAGCAAGCGTCACCACGAGGAAGAGTTGAAACTATTGGAAGAAGAGACTGCAAGAAGACTGGAAGAAGCAATTCGAAAAAATGTTGAGGAAAAGCTTAACACAGAGGAAGTCAAGTTAGAAATAGAAAGGCGCGTAGCAGAGGGAGTGAAGAAACTGTTTGATGATGTTGAAGCTCAACTTGAAAAAGGAAAGGAAGATGCTCTTACTGAAGCTAGAAGGAAAGAAGAACAAGCTCGTAAAGAAAGAGAAGAACTGGACCTGATGCTTGAAGAGAATAGGAGGAGAGTGGAAGAATCTCAGAGAAAAGAAGCTCTAGAGCAGCAAAGAAAGGAAGAGGAACGACAAAGGGAATTAGAGATGATTCAGAGACAGAAAGAAGAGGCTGCTCTGAGAAAGAAGCTGGAGGATGAAGAAGAACATGCGAATCGAATTAATTCTTTGGGTAAGAACAAATCTAGGCCCAAGTCTTATGGTTTCTAA

Predicted protein sequences of Glyma06g16660

Limit To All Plant Sequences

>Glyma06g16660.1   sequence type=predicted peptide   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRSVSRSRSPSRRRRYSPSTVSHHRHSRTSHRRRRRHRTSSSPSLSRSPTPKPKKDQKKSKRHHEEELKLLEEETARRLEEAIRKNVEEKLNTEEVKLEIERRVAEGVKKLFDDVEAQLEKGKEDALTEARRKEEQARKEREELDLMLEENRRRVEESQRKEALEQQRKEEERQRELEMIQRQKEEAALRKKLEDEEEHANRINSLGKNKSRPKSYGF*

>Glyma06g16660.3   sequence type=predicted peptide   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASIISSCSRNLLESKRHHEEELKLLEEETARRLEEAIRKNVEEKLNTEEVKLEIERRVAEGVKKLFDDVEAQLEKGKEDALTEARRKEEQARKEREELDLMLEENRRRVEESQRKEALEQQRKEEERQRELEMIQRQKEEAALRKKLEDEEEHANRINSLGKNKSRPKSYGF*

>Glyma06g16660.4   sequence type=predicted peptide   gene model=Glyma06g16660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASIISSCSRNLLESKRHHEEELKLLEEETARRLEEAIRKNVEEKLNTEEVKLEIERRVAEGVKKLFDDVEAQLEKGKEDALTEARRKEEQARKEREELDLMLEENRRRVEESQRKEALEQQRKEEERQRELEMIQRQKEEAALRKKLEDEEEHANRINSLGKNKSRPKSYGF*

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