Glyma06g16650 - SoyBase

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Report for Sequence Feature Glyma06g16650

Feature Type:	gene_model
Chromosome:	Gm06
Start:	13058754
stop:	13060638
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G03200	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr2:966506-967891 REVERSE LENGTH=461	SoyBase	E_val: 0	ISS
GO:0000041	GO-bp	Annotation by Michelle Graham. GO Biological Process: transition metal ion transport	SoyBase	N/A	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0016926	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein desumoylation	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0050665	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_B9SA95	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase nepenthesin-1, putative n=1 Tax=Ricinus communis RepID=B9SA95_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KBR3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBR3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16650

Paralog	Evidence	Comments
Glyma04g38400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g158800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16650

Limit To All Plant Sequences

>Glyma06g16650.1   sequence type=CDS   gene model=Glyma06g16650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGATGGCAAAACTAAAGCACCCTTCATTGGTGGCACTTCTTCTAGTACTAGCGTGTCTTTTTATTGCTCCAACATCCTCAACATCCAGAAAAACAAGTTTCAAGCAGCAGCACCCTTGCCCAACAACAAATGGGTTCCGAGTCATGCTTCGCCACGTCGATTCGGGAAAAAACTTAACCAAACTAGAGCGTGTCCAACACGGGATCAAGCGTGGAAAGAGCAGGCTTCAGAAGCTTAATGCAATGGTGTTGGCAGCATCATCAACACCTGATTCTGAAGATCAGTTAGAAGCCCCTATTCACGCAGGAAATGGAGAGTACTTAATAGAGTTAGCCATTGGAACACCACCAGTGTCTTACCCTGCGGTTTTGGACACTGGCAGTGACCTTATATGGACACAGTGCAAGCCTTGCACACGGTGTTACAAACAACCAACACCCATTTTTGATCCCAAGAAGTCCTCTTCTTTTTCCAAGGTTTCATGCGGTAGTAGCTTGTGCAGTGCTTTGCCTTCTTCAACATGCAGTGATGGGTGTGAGTATGTTTATTCATACGGTGATTATTCAATGACACAAGGCGTTTTGGCTACCGAGACTTTCACTTTTGGGAAGTCTAAGAACAAGGTTTCCGTTCACAACATTGGTTTTGGTTGTGGGGAGGACAATGAAGGTGATGGATTTGAACAAGCTTCAGGGCTGGTTGGTCTTGGACGTGGTCCTTTGTCTTTGGTTTCTCAACTCAAGGAACAAAGATTTTCTTATTGTTTGACCCCAATTGATGACACAAAAGAAAGTGTTTTGTTGTTGGGGTCTTTGGGTAAAGTGAAAGATGCAAAAGAAGTGGTGACAACACCTCTTCTCAAAAACCCTTTGCAACCTTCTTTTTACTATCTTTCTCTTGAAGCTATCTCTGTTGGGGACACTCGATTGTCCATTGAGAAGTCCACTTTTGAAGTGGGGGATGATGGGAATGGTGGTGTGATCATAGACTCTGGCACCACAATCACCTACGTTCAACAAAAGGCCTATGAGGCACTCAAAAAAGAGTTCATTTCTCAAACCAAACTTGCTTTGGACAAAACTAGCTCAACAGGGTTGGATCTTTGTTTCTCCTTGCCATCAGGGTCAACACAAGTGGAGATTCCAAAGCTTGTTTTCCATTTCAAGGGTGGGGATTTGGAGCTTCCTGCTGAGAACTACATGATTGGTGACTCCAATTTGGGAGTGGCTTGTTTGGCCATGGGTGCTTCTAGTGGAATGTCTATATTTGGAAATGTTCAACAGCAGAACATTTTGGTGAACCATGATCTTGAAAAGGAGACCATTTCTTTTGTTCCTACGTCGTGTGATCAGTTGTGA

Predicted protein sequences of Glyma06g16650

Limit To All Plant Sequences

>Glyma06g16650.1   sequence type=predicted peptide   gene model=Glyma06g16650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVMAKLKHPSLVALLLVLACLFIAPTSSTSRKTSFKQQHPCPTTNGFRVMLRHVDSGKNLTKLERVQHGIKRGKSRLQKLNAMVLAASSTPDSEDQLEAPIHAGNGEYLIELAIGTPPVSYPAVLDTGSDLIWTQCKPCTRCYKQPTPIFDPKKSSSFSKVSCGSSLCSALPSSTCSDGCEYVYSYGDYSMTQGVLATETFTFGKSKNKVSVHNIGFGCGEDNEGDGFEQASGLVGLGRGPLSLVSQLKEQRFSYCLTPIDDTKESVLLLGSLGKVKDAKEVVTTPLLKNPLQPSFYYLSLEAISVGDTRLSIEKSTFEVGDDGNGGVIIDSGTTITYVQQKAYEALKKEFISQTKLALDKTSSTGLDLCFSLPSGSTQVEIPKLVFHFKGGDLELPAENYMIGDSNLGVACLAMGASSGMSIFGNVQQQNILVNHDLEKETISFVPTSCDQL*

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