Glyma06g16590 - SoyBase

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Report for Sequence Feature Glyma06g16590

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12974149
stop:	12977129
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G80500	AT	Annotation by Michelle Graham. TAIR10: SNARE-like superfamily protein \| chr1:30271195-30272431 FORWARD LENGTH=135	SoyBase	E_val: 4.00E-91	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3487	KOG	TRAPP 20 K subunit	JGI		ISS
PTHR12403	Panther	MBP-1 INTERACTING PROTEIN-2A	JGI		ISS
PF04628	PFAM	Sedlin, N-terminal conserved region	JGI		ISS
UniRef100_F4HTY0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SNARE-like protein n=1 Tax=Arabidopsis thaliana RepID=F4HTY0_ARATH	SoyBase	E_val: 2.00E-88	ISS
UniRef100_I1KBQ5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBQ5_SOYBN	SoyBase	E_val: 6.00E-95	ISS

Expression Patterns of Glyma06g16590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16590

Paralog	Evidence	Comments
Glyma04g38461	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g158300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16590

Limit To All Plant Sequences

>Glyma06g16590.1   sequence type=CDS   gene model=Glyma06g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACCACTGCCTGTTTCATCATTGTTAGCAGAAATGACATTCCTATATATGAAGCTGAAGTTGGAGTAGCTGCTAAAAGGGAGGATTCTGCTCAGCTGCATCAATTTATCCTTCATGCTGCTCTCGATATTGTTCAGGACCTTGCATGGACTACTAGCGCTATGTACTTGAAATCAGTAGACAGGTTTAATGAACTTGTGGTGTCAGTGTATGTTACAGCTGGTCATACCCGATTTATGTTGCTACATGACTCCCGTAATGATGATGGTATCAAGAGCTTCTTCCAAGAGGTGCATGAGCTTTACATAAAGACTCTCCTTAATCCCCTGTACTTACCTGGCTCCCGGATCACGTCATCACATTTTGATACTAAAGTCCGAGCCCTTGCACGAAAGTATTTGTAG

Predicted protein sequences of Glyma06g16590

Limit To All Plant Sequences

>Glyma06g16590.1   sequence type=predicted peptide   gene model=Glyma06g16590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTACFIIVSRNDIPIYEAEVGVAAKREDSAQLHQFILHAALDIVQDLAWTTSAMYLKSVDRFNELVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKTLLNPLYLPGSRITSSHFDTKVRALARKYL*

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