Glyma06g16570 - SoyBase

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Report for Sequence Feature Glyma06g16570

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12963336
stop:	12969147
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52950	AT	Annotation by Michelle Graham. TAIR10: CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein \| chr3:19634866-19636536 FORWARD LENGTH=556	SoyBase	E_val: 0	ISS
PTHR11911	Panther	INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED	JGI		ISS
PTHR11911:SF10	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00564	PFAM	PB1 domain	JGI		ISS
PF00571	PFAM	CBS domain	JGI		ISS
UniRef100_G7J2M9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Octicosapeptide/Phox/Bem1p domain-containing protein n=2 Tax=Medicago truncatula RepID=G7J2M9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBQ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBQ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16570

Paralog	Evidence	Comments
Glyma04g38480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g158200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g16570

Limit To All Plant Sequences

>Glyma06g16570.2   sequence type=transcript   gene model=Glyma06g16570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAGTCGGAAAAAACAAAAGAAAGAAAATAAAAAAATGATCTTACGGAAGAGAGAGGGCCCCGCAGAAGCCTAACCTCTTCTCTGTGTGGTGATTTGACATGAAGAAGAGAGGATATCATATCATAAAAATTAAGCGCCAAATCTGATTAACATTCACATTCAGAAGAATGAGCACCACTCAAGCTTCCTCCAACAACAAGAAGACCAAACGCAATCACAAGAAATCCCTCTCCCTCCCCGCCCGTAACGGAATCACCCCTCCGGATGATGGCGGAGAAAGAACCGTTAAAAAGCTTCGGTTGTCGAAGGCGCTCACCATCCCCGACGGAACCACCGTCTCTGAGGCCTGCAGGCGCATGGCTGCTCGCCGCATCGACGCCGTTTTGCTAACTGATTCCAACGCCCTGCTTTCCGGAATTCTCACTGACAAGGATGTGGCTACTAGAGTCGTCGCCGAGGGGCTGAAGCCGGAGGAGACGACGGTGTCGAAAGTAATGACGCGGAATCCCATCTTTGTCACGTCGGATACGCTCGCCATTGATGCGCTTCAGAAAATGATTCAGGGTAGATTTAGACACCTCCCTGTTGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATCACCAAATGTCTTTATGATGCCATATCTAGAATGGAGAGCGCTACTCAACAGGGGAGTGCCGTTGCTGCAGCAGTTGAGGGAGTGGAACTTCAGCGAACTACTCCAAATACTTTCATTGAAACATTGAGGGAGCGCGTGTTCAAACCTTCCCTGTCAACTATAGTCGATGAAAATACAAAGGTTGCTATTGCATTAGTATCAGATCCTGTGTACGTGGCAGCAAAAAAGATGCGGGAGTTACATGTAAATGCAGCTGTGATTGTGATGGAAAACAAGATTAAGGGGATACTTACTTCAAAGGACATCCTTATGCGCGTGGTGGCTCAAAATCTTTCCCCAGAGTCGGCTCTTCTGGAAAAGGTGATGACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGATGGAAATGCTATTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTCTGGTTGAAAGTAGTCCTGGAGCATCTAATGATGCGGCAAACACAGTTATGCAAAAATTTTGGGACTCAGCTTTTGCTCTAGAGCCGCCGCCTGAAGATTTTGACACCCATAGTGAAGCCTCTGGACGGTTGACTTTGGATGGGGCAGATACCACAAAGTCTACATATCAATCTGTGCTGAACATCAAGAACTTCTATCTGCTGTCATGCAAAGAATTGGTGATATTAATGATGGAGAACACCCTACAATGCTGTATAAGGACGATGATGGTGATAAAATTATTATTGCGACTGATAACGATCTTGTGGCTGCCGTCAGCTATGCTAGGTCTGCAGGACTGAAGGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACTGCAACCTGGTACAGCCACTATACAGAAAACCAGTACATTGCGTCTCCGTTCTGGTATTTTTGCAGGTGTTGTTGTTCTAACGAGCATTAGCGTATTGGTGTACTTAAAGCGCTCTAGACAGTAATATGTTTGCCAGCTTGAAAACAAAACATGCTATAATCTTACTCTATGAATCCCAGAGTTTCGTCATAAATCAAATGCTCGTTGACAAAGGAAATGATGGACACGGAATAGGTGGATGATGTGGAGTCTCTCTAATCAGCCGTTTTTAATTATCTTTTTCTTTTTGAGTCACTGATGTAATTAGAACCAAAGATATAGTCGTGGCATGCAATACTGAAGTGTCACCATGTTCTTCTCAATTAAGGTACTTGTAATTCCATATATTTATCAACTTTCATCACTTACGACTTTTGCGTCCAGATATTATCAGTTAGATCACCATCAAGGTCAAGCCATTTGATGAAATCAATTACAATATTATTAAAGTAAATTTTTATTATTTAATGTAGGAATAGCATGACATCCTTCATTGTCATCTTCACATTTTATTA

Coding sequences of Glyma06g16570

Limit To All Plant Sequences

>Glyma06g16570.1   sequence type=CDS   gene model=Glyma06g16570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACCACTCAAGCTTCCTCCAACAACAAGAAGACCAAACGCAATCACAAGAAATCCCTCTCCCTCCCCGCCCGTAACGGAATCACCCCTCCGGATGATGGCGGAGAAAGAACCGTTAAAAAGCTTCGGTTGTCGAAGGCGCTCACCATCCCCGACGGAACCACCGTCTCTGAGGCCTGCAGGCGCATGGCTGCTCGCCGCATCGACGCCGTTTTGCTAACTGATTCCAACGCCCTGCTTTCCGGAATTCTCACTGACAAGGATGTGGCTACTAGAGTCGTCGCCGAGGGGCTGAAGCCGGAGGAGACGACGGTGTCGAAAGTAATGACGCGGAATCCCATCTTTGTCACGTCGGATACGCTCGCCATTGATGCGCTTCAGAAAATGATTCAGGGTAGATTTAGACACCTCCCTGTTGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATCACCAAATGTCTTTATGATGCCATATCTAGAATGGAGAGCGCTACTCAACAGGGGAGTGCCGTTGCTGCAGCAGTTGAGGGAGTGGAACTTCAGCGAACTACTCCAAATACTTTCATTGAAACATTGAGGGAGCGCGTGTTCAAACCTTCCCTGTCAACTATAGTCGATGAAAATACAAAGGTTGCTATTGCATTAGTATCAGATCCTGTGTACGTGGCAGCAAAAAAGATGCGGGAGTTACATGTAAATGCAGCTGTGATTGTGATGGAAAACAAGATTAAGGGGATACTTACTTCAAAGGACATCCTTATGCGCGTGGTGGCTCAAAATCTTTCCCCAGAGTCGGCTCTTCTGGAAAAGGTGATGACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGATGGAAATGCTATTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTCTGGTTGAAAGTAGTCCTGGAGCATCTAATGATGCGGCAAACACAGTTATGCAAAAATTTTGGGACTCAGCTTTTGCTCTAGAGCCGCCGCCTGAAGATTTTGACACCCATAGTGAAGCCTCTGGACGGTTGACTTTGGATGGGGCAGATACCACAAAGTCTACATATCAATCTGTAGGTTTTGGAAATTCATTTGCTTTTAAATTTGATGATCACAATGGCCATGTGCATCGATTCTACTGTGGTGCTGAACATCAAGAACTTCTATCTGCTGTCATGCAAAGAATTGGTGATATTAATGATGGAGAACACCCTACAATGCTGTATAAGGACGATGATGGTGATAAAATTATTATTGCGACTGATAACGATCTTGTGGCTGCCGTCAGCTATGCTAGGTCTGCAGGACTGAAGGCTTTAAAGTTGGATTTGGAGTTTCCCAATTCAACCAAACCAACAAAACTGCAACCTGGTACAGCCACTATACAGAAAACCAGTACATTGCGTCTCCGTTCTGGTATTTTTGCAGGTGTTGTTGTTCTAACGAGCATTAGCGTATTGGTGTACTTAAAGCGCTCTAGACAGTAA

>Glyma06g16570.2   sequence type=CDS   gene model=Glyma06g16570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGCACCACTCAAGCTTCCTCCAACAACAAGAAGACCAAACGCAATCACAAGAAATCCCTCTCCCTCCCCGCCCGTAACGGAATCACCCCTCCGGATGATGGCGGAGAAAGAACCGTTAAAAAGCTTCGGTTGTCGAAGGCGCTCACCATCCCCGACGGAACCACCGTCTCTGAGGCCTGCAGGCGCATGGCTGCTCGCCGCATCGACGCCGTTTTGCTAACTGATTCCAACGCCCTGCTTTCCGGAATTCTCACTGACAAGGATGTGGCTACTAGAGTCGTCGCCGAGGGGCTGAAGCCGGAGGAGACGACGGTGTCGAAAGTAATGACGCGGAATCCCATCTTTGTCACGTCGGATACGCTCGCCATTGATGCGCTTCAGAAAATGATTCAGGGTAGATTTAGACACCTCCCTGTTGTGGAAAATGGTGAAGTCATTGCCATGCTGGATATCACCAAATGTCTTTATGATGCCATATCTAGAATGGAGAGCGCTACTCAACAGGGGAGTGCCGTTGCTGCAGCAGTTGAGGGAGTGGAACTTCAGCGAACTACTCCAAATACTTTCATTGAAACATTGAGGGAGCGCGTGTTCAAACCTTCCCTGTCAACTATAGTCGATGAAAATACAAAGGTTGCTATTGCATTAGTATCAGATCCTGTGTACGTGGCAGCAAAAAAGATGCGGGAGTTACATGTAAATGCAGCTGTGATTGTGATGGAAAACAAGATTAAGGGGATACTTACTTCAAAGGACATCCTTATGCGCGTGGTGGCTCAAAATCTTTCCCCAGAGTCGGCTCTTCTGGAAAAGGTGATGACTCCAAATCCAGAATGTGCATCTCTAGAGACAACAATTCTTGATGCACTGCATATGATGCATAATGGGAAGTTCTTACATCTTCCCGTGGTGGACAGAGATGGAAATGCTATTGCTTGTTTGGATGTTTTGCAGATAACTCATGCTGCAATTTCTCTGGTTGAAAGTAGTCCTGGAGCATCTAATGATGCGGCAAACACAGTTATGCAAAAATTTTGGGACTCAGCTTTTGCTCTAGAGCCGCCGCCTGAAGATTTTGACACCCATAGTGAAGCCTCTGGACGGTTGACTTTGGATGGGGCAGATACCACAAAGTCTACATATCAATCTGTGCTGAACATCAAGAACTTCTATCTGCTGTCATGCAAAGAATTGGTGATATTAATGATGGAGAACACCCTACAATGCTGTATAAGGACGATGATGGTGATAAAATTATTATTGCGACTGATAACGATCTTGTGGCTGCCGTCAGCTATGCTAGGTCTGCAGGACTGA

Predicted protein sequences of Glyma06g16570

Limit To All Plant Sequences

>Glyma06g16570.1   sequence type=predicted peptide   gene model=Glyma06g16570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTTQASSNNKKTKRNHKKSLSLPARNGITPPDDGGERTVKKLRLSKALTIPDGTTVSEACRRMAARRIDAVLLTDSNALLSGILTDKDVATRVVAEGLKPEETTVSKVMTRNPIFVTSDTLAIDALQKMIQGRFRHLPVVENGEVIAMLDITKCLYDAISRMESATQQGSAVAAAVEGVELQRTTPNTFIETLRERVFKPSLSTIVDENTKVAIALVSDPVYVAAKKMRELHVNAAVIVMENKIKGILTSKDILMRVVAQNLSPESALLEKVMTPNPECASLETTILDALHMMHNGKFLHLPVVDRDGNAIACLDVLQITHAAISLVESSPGASNDAANTVMQKFWDSAFALEPPPEDFDTHSEASGRLTLDGADTTKSTYQSVGFGNSFAFKFDDHNGHVHRFYCGAEHQELLSAVMQRIGDINDGEHPTMLYKDDDGDKIIIATDNDLVAAVSYARSAGLKALKLDLEFPNSTKPTKLQPGTATIQKTSTLRLRSGIFAGVVVLTSISVLVYLKRSRQ*

>Glyma06g16570.2   sequence type=predicted peptide   gene model=Glyma06g16570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTTQASSNNKKTKRNHKKSLSLPARNGITPPDDGGERTVKKLRLSKALTIPDGTTVSEACRRMAARRIDAVLLTDSNALLSGILTDKDVATRVVAEGLKPEETTVSKVMTRNPIFVTSDTLAIDALQKMIQGRFRHLPVVENGEVIAMLDITKCLYDAISRMESATQQGSAVAAAVEGVELQRTTPNTFIETLRERVFKPSLSTIVDENTKVAIALVSDPVYVAAKKMRELHVNAAVIVMENKIKGILTSKDILMRVVAQNLSPESALLEKVMTPNPECASLETTILDALHMMHNGKFLHLPVVDRDGNAIACLDVLQITHAAISLVESSPGASNDAANTVMQKFWDSAFALEPPPEDFDTHSEASGRLTLDGADTTKSTYQSVLNIKNFYLLSCKELVILMMENTLQCCIRTMMVIKLLLRLITILWLPSAMLGLQD*

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