Glyma06g16440 - SoyBase

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Report for Sequence Feature Glyma06g16440

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12910301
stop:	12912252
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G01720	AT	Annotation by Michelle Graham. TAIR10: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein \| chr1:268471-269514 FORWARD LENGTH=289	SoyBase	E_val: 2.00E-120	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009620	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fungus	SoyBase	N/A	ISS
GO:0009695	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid biosynthetic process	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009753	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0010200	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to chitin	SoyBase	N/A	ISS
GO:0042538	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic salinity response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B7FJL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC-domain protein n=1 Tax=Medicago truncatula RepID=B7FJL7_MEDTR	SoyBase	E_val: 4.00E-156	ISS
UniRef100_C6TG16	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TG16_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g16440 not represented in the dataset	Glyma06g16440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16440

Paralog	Evidence	Comments
Glyma04g38560	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g157400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g16440

Limit To All Plant Sequences

>Glyma06g16440.2   sequence type=transcript   gene model=Glyma06g16440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACGTGTCGAAATTCACTATGTTTCTTTTATCCCTTCACGCTATAAAACCCACCCAGGGTGTGTCCTCTCTCATACGTTTCAAGTCGCAGAGCAAAGCAAAGCAGAGCCAACAACAAGAAGAACAAAACCAACATCAACAACCACAAGAAGAAGAAGCTTGCAAATTAGAAGAATCTTCAGTTGAAAGGGAAGAACACACAAGAACAAAGAGAGGAAGAAACGCGAATGAAGGGAGAATTAGAGTTGCCACCAGGGTTCAGATTTCACCCCACTGATGAAGAATTGGTGAATCACTACTTGTGTAGGAAGTGCGCGGGTCAACCAATCGCGGTTCCCATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGGTTCGTTTAATTTCTTATGGGGTTTCGTTTTGTGACTGCAACTAATTGCATAGTTCAATTGATTGATAATGAGTTGGATGATGCAGAAATTGGCTACTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGATCGGAAATACCCGAACGGTTCACGGCCGAACCGTGCCGCCGGAAGCGGCTATTGGAAAGCCACCGGCGCCGATAAGGCGATCGGAAAACCGAAAGCGCTAGGGATCAAGAAAGCTCTGGTTTTTTACGCCGGAAAAGCCCCCAAAGGAGTGAAAACCAATTGGATCATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAACAACAACAACTTGAGGCTTGATGATTGGGTGTTGTGTCGAATCTACAACAAGAAAGGGAAGATTGAGAAATACAACACGACCGCACCGAAGATGAATCTTGAAATGATTCATAGTTTTGAGCACGAGAACGAGACGAAGCCTGAGATTCATAAGCTTGGAAATGAGCAATTGTTGTACACGGAGACTTCAGATTCGGTGCCAAGGTTGCACACGGACTCGAGCAGCTCGGAGCACGTGGTTTCGCCCGATGTGAGGTGCGAGAGGGAAGTGCAGAGCGACCCCAAGTGGAATAACGATGATTATGATCTGGGCCTACAGCTAGAAAACGCGTTTGATTTTCAGTTTAATTACTTGGACGATAATAACCTTTCCGTCGACGATGACCCCTTTGGCACTGTTCAGTACCAAATGGGTCAGCTCTCGCCCTTGCAGGACATGTTCATGTACCTACAGAAGATGTGAAAACGATACGTTTTTTTTGGACAAGATGATGGGACCCGCAAATATCTTTATTATTTTTTTGTAGTAAAAGTCAGCATTTGTGTGCAATTGCATTGCACCTAACATTTTGTGGACTAGGCCAAGCTTAGTAAACTATTCTTATTCTTTGTTCTAGAGAGATCAGGGAATGTGGAATTCGGTTGAAATGAGCTAGTATTTGGATTGGATCTTGGTGTAAAGAGAACAAAAAAAAAAAAGGAGAAAAGGAGTTAGGTGTTGCAGTAAGTAAAAAGTAAGCCGAATGATGGATGATAGGATATTGGAGGGTTAATGAGTAGGTGTAAGGAAAATTCTTGTTCCATTGCTATTCCAGTATGATTTTTTCATATATTTTGTAATATACCAACTTCTGCTTTTCAATTCAAAGGAAACAATTGAATGAAAAATCTTCCATTCAAAGGATGGAAATGATGGTGCAGCCTAGCCTGGCCTCGAGTGTTGTACATGTTTGACACTTTGTACTATATATATATATATAT

Coding sequences of Glyma06g16440

Limit To All Plant Sequences

>Glyma06g16440.1   sequence type=CDS   gene model=Glyma06g16440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGGAGAATTAGAGTTGCCACCAGGGTTCAGATTTCACCCCACTGATGAAGAATTGGTGAATCACTACTTGTGTAGGAAGTGCGCGGGTCAACCAATCGCGGTTCCCATCATCAAAGAGGTCGATTTGTACAAGTTTGATCCATGGCAGCTTCCAGAAATTGGCTACTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGATCGGAAATACCCGAACGGTTCACGGCCGAACCGTGCCGCCGGAAGCGGCTATTGGAAAGCCACCGGCGCCGATAAGGCGATCGGAAAACCGAAAGCGCTAGGGATCAAGAAAGCTCTGGTTTTTTACGCCGGAAAAGCCCCCAAAGGAGTGAAAACCAATTGGATCATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAACAACAACAACTTGAGGCTTGATGATTGGGTGTTGTGTCGAATCTACAACAAGAAAGGGAAGATTGAGAAATACAACACGACCGCACCGAAGATGAATCTTGAAATGATTCATAGTTTTGAGCACGAGAACGAGACGAAGCCTGAGATTCATAAGCTTGGAAATGAGCAATTGTTGTACACGGAGACTTCAGATTCGGTGCCAAGGTTGCACACGGACTCGAGCAGCTCGGAGCACGTGGTTTCGCCCGATGTGAGGTGCGAGAGGGAAGTGCAGAGCGACCCCAAGTGGAATAACGATGATTATGATCTGGGCCTACAGCTAGAAAACGCGTTTGATTTTCAGTTTAATTACTTGGACGATAATAACCTTTCCGTCGACGATGACCCCTTTGGCACTGTTCAGTACCAAATGGGTCAGCTCTCGCCCTTGCAGGACATGTTCATGTACCTACAGAAGATGTGA

>Glyma06g16440.2   sequence type=CDS   gene model=Glyma06g16440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTTCGTTTTGTGACTGCAACTAATTGCATAGTTCAATTGATTGATAATGAGTTGGATGATGCAGAAATTGGCTACTACGGCGAGAAAGAATGGTACTTCTTTTCTCCTCGGGATCGGAAATACCCGAACGGTTCACGGCCGAACCGTGCCGCCGGAAGCGGCTATTGGAAAGCCACCGGCGCCGATAAGGCGATCGGAAAACCGAAAGCGCTAGGGATCAAGAAAGCTCTGGTTTTTTACGCCGGAAAAGCCCCCAAAGGAGTGAAAACCAATTGGATCATGCACGAATATCGCCTCGCCAATGTTGACCGATCTGCCTCCAAGAAAAACAACAACAACTTGAGGCTTGATGATTGGGTGTTGTGTCGAATCTACAACAAGAAAGGGAAGATTGAGAAATACAACACGACCGCACCGAAGATGAATCTTGAAATGATTCATAGTTTTGAGCACGAGAACGAGACGAAGCCTGAGATTCATAAGCTTGGAAATGAGCAATTGTTGTACACGGAGACTTCAGATTCGGTGCCAAGGTTGCACACGGACTCGAGCAGCTCGGAGCACGTGGTTTCGCCCGATGTGAGGTGCGAGAGGGAAGTGCAGAGCGACCCCAAGTGGAATAACGATGATTATGATCTGGGCCTACAGCTAGAAAACGCGTTTGATTTTCAGTTTAATTACTTGGACGATAATAACCTTTCCGTCGACGATGACCCCTTTGGCACTGTTCAGTACCAAATGGGTCAGCTCTCGCCCTTGCAGGACATGTTCATGTACCTACAGAAGATGTGA

Predicted protein sequences of Glyma06g16440

Limit To All Plant Sequences

>Glyma06g16440.1   sequence type=predicted peptide   gene model=Glyma06g16440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGELELPPGFRFHPTDEELVNHYLCRKCAGQPIAVPIIKEVDLYKFDPWQLPEIGYYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNLRLDDWVLCRIYNKKGKIEKYNTTAPKMNLEMIHSFEHENETKPEIHKLGNEQLLYTETSDSVPRLHTDSSSSEHVVSPDVRCEREVQSDPKWNNDDYDLGLQLENAFDFQFNYLDDNNLSVDDDPFGTVQYQMGQLSPLQDMFMYLQKM*

>Glyma06g16440.2   sequence type=predicted peptide   gene model=Glyma06g16440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFRFVTATNCIVQLIDNELDDAEIGYYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKAIGKPKALGIKKALVFYAGKAPKGVKTNWIMHEYRLANVDRSASKKNNNNLRLDDWVLCRIYNKKGKIEKYNTTAPKMNLEMIHSFEHENETKPEIHKLGNEQLLYTETSDSVPRLHTDSSSSEHVVSPDVRCEREVQSDPKWNNDDYDLGLQLENAFDFQFNYLDDNNLSVDDDPFGTVQYQMGQLSPLQDMFMYLQKM*

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