Glyma06g16380 - SoyBase

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Report for Sequence Feature Glyma06g16380

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12862641
stop:	12865006
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27990	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52420.1); Has 86 Blast hits to 86 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). \| chr1:9752799-9753919 REVERSE LENGTH=271	SoyBase	E_val: 2.00E-113	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KBN9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KBN9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9C7F4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT1G27990 protein n=1 Tax=Arabidopsis thaliana RepID=Q9C7F4_ARATH	SoyBase	E_val: 1.00E-110	ISS

Expression Patterns of Glyma06g16380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g16380 not represented in the dataset	Glyma06g16380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16380

Paralog	Evidence	Comments
Glyma04g38620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g157000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g16380

Limit To All Plant Sequences

>Glyma06g16380.6   sequence type=transcript   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAGTGTCGTGCATGCCACATTCCACGTTACAACGTTGCTATTGATTCGCGTGTCTTGGGGAAGTGCATGGTTCTTTTATGTCTTGTGCACCAATTTAGGATCATACACACAGCAACCTTGACATAATCGATATCTTTCATCGCCTACGGCAACGCTTCATTTGAATCAACACTCCTTCCTCTTCCTCTCTCTCGTCCATTTTAGTTGTAAGACTAAGATCTCATCTTAGATTCCATTTTGTCTCTTCATTGCCCCCAAAATAACTTTATTTTCTCTGAATTATTGCCTACAGCAACTTTGAATAATTCTCCTTCGTATCAAGTCTTCCTCATCTTCACCACCTTTTTGTAAGTGGATATTTATGTGTCTAAGAACATAAACTAAAAAACCAAGGCGAGTGAAAGAAAAAAAATGTCAGGTGTGTCTCTAGCAGTGTCTGGTCCACCAGCAGCAACAGTGGCTGAAGCAGCAGGTACAAAGCCTAAACGAAGAACAGAACAGGCACCAATGGGTGGCATGATGGGTTCACTGCGCGTGATAGAACTTCAGCTGGTGGCCTTCATCTTGGTGTTCTCAGCAAGTGGCCTCGTCCCACTCCTTGATCTAGTGTTCCCTGCATTCGCCTCTGCATACATCTTGGCACTTTCACAATTCGCATTTCCATCGGCGTCTTCGTCGGGGACTGAGATCTTCAAAGGGAGCAGATTGTTCCGAATGTATGTTGTTTTTGGCACCACCGTGGGGCTGTTCTTGCCGCTGGCTTACGTGCTTGGTGGGTTTGCAAGAGGGGATGAGCATGCAGTGCGTTCTGCCACCCCGCACTTGTTCTTGCTATCGTTTCAGATACTCACTGAGAACATTATTGGTGGTTTGTCTCTGTTTTCGCCACCCGTGAGGGCGTTGGTGCCAATCATCTACACAATTCGGAGGATCTTTGTGGATATTGATTGGATTCATGATGTCTGGCTCAACAAGACTTTGCCTGTCAATGCCAAATTTCAGGACTTGGCATGGTATTGGTTCGGAAAGGGTCTGGCAGTGGCCAATCTGGCTTATTTCTCCATTAATCTATTTGGGTTCTTGATACCCAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAAGGGAGAGATCTATACCAAGTCAGCAGAGGATAAAAGATCTGTGGTTGTCAACAGAACCCAATTATCAGAAAAGAAGACAGATTAAGAGCTATAGCCAATTTTGACTTCACTTGCAATTTTAAACACTTTCAGCATTTTTTTTCCTTAGAAAATAGTAATGAATGTGTATGATGATATGTGAGCCTGGACTTAAAAATCTGGCTCTCCGTTACATTATGAAACTATATATGGCTTTTGGATAAATTTTATGTATCATACAGGTTAATTCAATATTTGCTGATTTCTTCTACTCTTTTTCTCCTCTTTG

>Glyma06g16380.7   sequence type=transcript   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTAAGATCTCATCTTAGATTCCATTTTGTCTCTTCATTGCCCCCAAAATAACTTTATTTTCTCTGAATTATTGCCTACAGCAACTTTGAATAATTCTCCTTCGTATCAAGTCTTCCTCATCTTCACCACCTTTTTATATTTATGTGTCTAAGAACATAAACTAAAAAACCAAGGCGAGTGAAAGAAAAAAAATGTCAGGTGTGTCTCTAGCAGTGTCTGGTCCACCAGCAGCAACAGTGGCTGAAGCAGCAGGTACAAAGCCTAAACGAAGAACAGAACAGGCACCAATGGGTGGCATGATGGGTTCACTGCGCGTGATAGAACTTCAGCTGGTGGCCTTCATCTTGGTGTTCTCAGCAAGTGGCCTCGTCCCACTCCTTGATCTAGTGTTCCCTGCATTCGCCTCTGCATACATCTTGGCACTTTCACAATTCGCATTTCCATCGGCGTCTTCGTCGGGGACTGAGATCTTCAAAGGGAGCAGATTGTTCCGAATGTATGTTGTTTTTGGCACCACCGTGGGGCTGTTCTTGCCGCTGGCTTACGTGCTTGGTGGGTTTGCAAGAGGGGATGAGCATGCAGTGCGTTCTGCCACCCCGCACTTGTTCTTGCTATCGTTTCAGATACTCACTGAGAACATTATTGGTGGTTTGTCTCTGTTTTCGCCACCCGTGAGGGCGTTGGTGCCAATCATCTACACAATTCGGAGGATCTTTGTGGATATTGATTGGATTCATGATGTCTGGCTCAACAAGACTTTGCCTGTCAATGCCAAATTTCAGGACTTGGCATGGTATTGGTTCGGAAAGGGTCTGGCAGTGGCCAATCTGGCTTATTTCTCCATTAATCTATTTGGGTTCTTGATACCCAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAAGGGAGAGATCTATACCAAGTCAGCAGAGGATAAAAGATCTGTGGTTGTCAACAGAACCCAATTATCAGAAAAGAAGACAGATTAAGAGCTATAGCCAATTTTGACTTCACTTGCAATTTTAAACACTTTCAGCATTTTTTTTCCTTAGAAAATAGTAATGAATGTGTATGATGATATGTGAGCCTGGACTTAAAAATCTGGCTCTCCGTTACATTATGAAACTATATATGGCTTTTGGATAAATTTTATGTATCATACAGGTTAATTCAATATTTGCTGATTTCTTCTACTCTTTTTCTCCTCTTTG

>Glyma06g16380.8   sequence type=transcript   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACAAGTGTCGTGCATGCCACATTCCACGTTACAACGTTGCTATTGATTCGCGTGTCTTGGGGAAGTGCATGGTTCTTTTATGTCTTGTGCACCAATTTAGGATCATACACACAGCAACCTTGACATAATCGATATCTTTCATCGCCTACGGCAACGCTTCATTTGAATCAACACTCCTTCCTCTTCCTCTCTCTCGTCCATTTTAGTTCAACTTTGAATAATTCTCCTTCGTATCAAGTCTTCCTCATCTTCACCACCTTTTTATATTTATGTGTCTAAGAACATAAACTAAAAAACCAAGGCGAGTGAAAGAAAAAAAATGTCAGGTGTGTCTCTAGCAGTGTCTGGTCCACCAGCAGCAACAGTGGCTGAAGCAGCAGGTACAAAGCCTAAACGAAGAACAGAACAGGCACCAATGGGTGGCATGATGGGTTCACTGCGCGTGATAGAACTTCAGCTGGTGGCCTTCATCTTGGTGTTCTCAGCAAGTGGCCTCGTCCCACTCCTTGATCTAGTGTTCCCTGCATTCGCCTCTGCATACATCTTGGCACTTTCACAATTCGCATTTCCATCGGCGTCTTCGTCGGGGACTGAGATCTTCAAAGGGAGCAGATTGTTCCGAATGTATGTTGTTTTTGGCACCACCGTGGGGCTGTTCTTGCCGCTGGCTTACGTGCTTGGTGGGTTTGCAAGAGGGGATGAGCATGCAGTGCGTTCTGCCACCCCGCACTTGTTCTTGCTATCGTTTCAGATACTCACTGAGAACATTATTGGTGGTTTGTCTCTGTTTTCGCCACCCGTGAGGGCGTTGGTGCCAATCATCTACACAATTCGGAGGATCTTTGTGGATATTGATTGGATTCATGATGTCTGGCTCAACAAGACTTTGCCTGTCAATGCCAAATTTCAGGACTTGGCATGGTATTGGTTCGGAAAGGGTCTGGCAGTGGCCAATCTGGCTTATTTCTCCATTAATCTATTTGGGTTCTTGATACCCAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAAGGGAGAGATCTATACCAAGTCAGCAGAGGATAAAAGATCTGTGGTTGTCAACAGAACCCAATTATCAGAAAAGAAGACAGATTAAGAGCTATAGCCAATTTTGACTTCACTTGCAATTTTAAACACTTTCAGCATTTTTTTTCCTTAGAAAATAGTAATGAATGTGTATGATGATATGTGAGCCTGGACTTAAAAATCTGGCTCTCCGTTACATTATGAAACTATATATGGCTTTTGGATAAATTTTATGTATCATACAGGTTAATTCAATATTTGCTGATTTCTTCTACTCTTTTTCTCCTCTTTG

Coding sequences of Glyma06g16380

Limit To All Plant Sequences

>Glyma06g16380.5   sequence type=CDS   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGTGTCTCTAGCAGTGTCTGGTCCACCAGCAGCAACAGTGGCTGAAGCAGCAGGTACAAAGCCTAAACGAAGAACAGAACAGGCACCAATGGGTGGCATGATGGGTTCACTGCGCGTGATAGAACTTCAGCTGGTGGCCTTCATCTTGGTGTTCTCAGCAAGTGGCCTCGTCCCACTCCTTGATCTAGTGTTCCCTGCATTCGCCTCTGCATACATCTTGGCACTTTCACAATTCGCATTTCCATCGGCGTCTTCGTCGGGGACTGAGATCTTCAAAGGGAGCAGATTGTTCCGAATGTATGTTGTTTTTGGCACCACCGTGGGGCTGTTCTTGCCGCTGGCTTACGTGCTTGGTGGGTTTGCAAGAGGGGATGAGCATGCAGTGCGTTCTGCCACCCCGCACTTGTTCTTGCTATCGTTTCAGATACTCACTGAGAACATTATTGGTGGTTTGTCTCTGTTTTCGCCACCCGTGAGGGCGTTGGTGCCAATCATCTACACAATTCGGAGGATCTTTGTGGATATTGATTGGATTCATGATGTCTGGCTCAACAAGACTTTGCCTGTCAATGCCAAATTTCAGGACTTGGCATGGTATTGGTTCGGAAAGGGTCTGGCAGTGGCCAATCTGGCTTATTTCTCCATTAATCTATTTGGGTTCTTGATACCCAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAAGGGAGAGATCTATACCAAGTCAGCAGAGGATAAAAGATCTGTGGTTGTCAACAGAACCCAATTATCAGAAAAGAAGACAGATTAA

>Glyma06g16380.6   sequence type=CDS   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGTGTCTCTAGCAGTGTCTGGTCCACCAGCAGCAACAGTGGCTGAAGCAGCAGGTACAAAGCCTAAACGAAGAACAGAACAGGCACCAATGGGTGGCATGATGGGTTCACTGCGCGTGATAGAACTTCAGCTGGTGGCCTTCATCTTGGTGTTCTCAGCAAGTGGCCTCGTCCCACTCCTTGATCTAGTGTTCCCTGCATTCGCCTCTGCATACATCTTGGCACTTTCACAATTCGCATTTCCATCGGCGTCTTCGTCGGGGACTGAGATCTTCAAAGGGAGCAGATTGTTCCGAATGTATGTTGTTTTTGGCACCACCGTGGGGCTGTTCTTGCCGCTGGCTTACGTGCTTGGTGGGTTTGCAAGAGGGGATGAGCATGCAGTGCGTTCTGCCACCCCGCACTTGTTCTTGCTATCGTTTCAGATACTCACTGAGAACATTATTGGTGGTTTGTCTCTGTTTTCGCCACCCGTGAGGGCGTTGGTGCCAATCATCTACACAATTCGGAGGATCTTTGTGGATATTGATTGGATTCATGATGTCTGGCTCAACAAGACTTTGCCTGTCAATGCCAAATTTCAGGACTTGGCATGGTATTGGTTCGGAAAGGGTCTGGCAGTGGCCAATCTGGCTTATTTCTCCATTAATCTATTTGGGTTCTTGATACCCAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAAGGGAGAGATCTATACCAAGTCAGCAGAGGATAAAAGATCTGTGGTTGTCAACAGAACCCAATTATCAGAAAAGAAGACAGATTAA

>Glyma06g16380.7   sequence type=CDS   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGTGTCTCTAGCAGTGTCTGGTCCACCAGCAGCAACAGTGGCTGAAGCAGCAGGTACAAAGCCTAAACGAAGAACAGAACAGGCACCAATGGGTGGCATGATGGGTTCACTGCGCGTGATAGAACTTCAGCTGGTGGCCTTCATCTTGGTGTTCTCAGCAAGTGGCCTCGTCCCACTCCTTGATCTAGTGTTCCCTGCATTCGCCTCTGCATACATCTTGGCACTTTCACAATTCGCATTTCCATCGGCGTCTTCGTCGGGGACTGAGATCTTCAAAGGGAGCAGATTGTTCCGAATGTATGTTGTTTTTGGCACCACCGTGGGGCTGTTCTTGCCGCTGGCTTACGTGCTTGGTGGGTTTGCAAGAGGGGATGAGCATGCAGTGCGTTCTGCCACCCCGCACTTGTTCTTGCTATCGTTTCAGATACTCACTGAGAACATTATTGGTGGTTTGTCTCTGTTTTCGCCACCCGTGAGGGCGTTGGTGCCAATCATCTACACAATTCGGAGGATCTTTGTGGATATTGATTGGATTCATGATGTCTGGCTCAACAAGACTTTGCCTGTCAATGCCAAATTTCAGGACTTGGCATGGTATTGGTTCGGAAAGGGTCTGGCAGTGGCCAATCTGGCTTATTTCTCCATTAATCTATTTGGGTTCTTGATACCCAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAAGGGAGAGATCTATACCAAGTCAGCAGAGGATAAAAGATCTGTGGTTGTCAACAGAACCCAATTATCAGAAAAGAAGACAGATTAA

>Glyma06g16380.8   sequence type=CDS   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCAGGTGTGTCTCTAGCAGTGTCTGGTCCACCAGCAGCAACAGTGGCTGAAGCAGCAGGTACAAAGCCTAAACGAAGAACAGAACAGGCACCAATGGGTGGCATGATGGGTTCACTGCGCGTGATAGAACTTCAGCTGGTGGCCTTCATCTTGGTGTTCTCAGCAAGTGGCCTCGTCCCACTCCTTGATCTAGTGTTCCCTGCATTCGCCTCTGCATACATCTTGGCACTTTCACAATTCGCATTTCCATCGGCGTCTTCGTCGGGGACTGAGATCTTCAAAGGGAGCAGATTGTTCCGAATGTATGTTGTTTTTGGCACCACCGTGGGGCTGTTCTTGCCGCTGGCTTACGTGCTTGGTGGGTTTGCAAGAGGGGATGAGCATGCAGTGCGTTCTGCCACCCCGCACTTGTTCTTGCTATCGTTTCAGATACTCACTGAGAACATTATTGGTGGTTTGTCTCTGTTTTCGCCACCCGTGAGGGCGTTGGTGCCAATCATCTACACAATTCGGAGGATCTTTGTGGATATTGATTGGATTCATGATGTCTGGCTCAACAAGACTTTGCCTGTCAATGCCAAATTTCAGGACTTGGCATGGTATTGGTTCGGAAAGGGTCTGGCAGTGGCCAATCTGGCTTATTTCTCCATTAATCTATTTGGGTTCTTGATACCCAGGTTCCTTCCAAGAGCTTTTGAGAGGTATTTCCAAGAGAAGGGAGAGATCTATACCAAGTCAGCAGAGGATAAAAGATCTGTGGTTGTCAACAGAACCCAATTATCAGAAAAGAAGACAGATTAA

Predicted protein sequences of Glyma06g16380

Limit To All Plant Sequences

>Glyma06g16380.5   sequence type=predicted peptide   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVSLAVSGPPAATVAEAAGTKPKRRTEQAPMGGMMGSLRVIELQLVAFILVFSASGLVPLLDLVFPAFASAYILALSQFAFPSASSSGTEIFKGSRLFRMYVVFGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENIIGGLSLFSPPVRALVPIIYTIRRIFVDIDWIHDVWLNKTLPVNAKFQDLAWYWFGKGLAVANLAYFSINLFGFLIPRFLPRAFERYFQEKGEIYTKSAEDKRSVVVNRTQLSEKKTD*

>Glyma06g16380.6   sequence type=predicted peptide   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVSLAVSGPPAATVAEAAGTKPKRRTEQAPMGGMMGSLRVIELQLVAFILVFSASGLVPLLDLVFPAFASAYILALSQFAFPSASSSGTEIFKGSRLFRMYVVFGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENIIGGLSLFSPPVRALVPIIYTIRRIFVDIDWIHDVWLNKTLPVNAKFQDLAWYWFGKGLAVANLAYFSINLFGFLIPRFLPRAFERYFQEKGEIYTKSAEDKRSVVVNRTQLSEKKTD*

>Glyma06g16380.7   sequence type=predicted peptide   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVSLAVSGPPAATVAEAAGTKPKRRTEQAPMGGMMGSLRVIELQLVAFILVFSASGLVPLLDLVFPAFASAYILALSQFAFPSASSSGTEIFKGSRLFRMYVVFGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENIIGGLSLFSPPVRALVPIIYTIRRIFVDIDWIHDVWLNKTLPVNAKFQDLAWYWFGKGLAVANLAYFSINLFGFLIPRFLPRAFERYFQEKGEIYTKSAEDKRSVVVNRTQLSEKKTD*

>Glyma06g16380.8   sequence type=predicted peptide   gene model=Glyma06g16380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGVSLAVSGPPAATVAEAAGTKPKRRTEQAPMGGMMGSLRVIELQLVAFILVFSASGLVPLLDLVFPAFASAYILALSQFAFPSASSSGTEIFKGSRLFRMYVVFGTTVGLFLPLAYVLGGFARGDEHAVRSATPHLFLLSFQILTENIIGGLSLFSPPVRALVPIIYTIRRIFVDIDWIHDVWLNKTLPVNAKFQDLAWYWFGKGLAVANLAYFSINLFGFLIPRFLPRAFERYFQEKGEIYTKSAEDKRSVVVNRTQLSEKKTD*

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