Glyma06g16330 - SoyBase

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Report for Sequence Feature Glyma06g16330

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12817416
stop:	12825189
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16330

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12770	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr4:7506736-7511408 REVERSE LENGTH=891	SoyBase	E_val: 2.00E-180	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
KOG0431	KOG	Auxilin-like protein and related proteins containing DnaJ domain	JGI		ISS
PTHR23172	Panther	AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED	JGI		ISS
PTHR23172:SF31	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7LEY3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxilin-like protein n=1 Tax=Medicago truncatula RepID=G7LEY3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBN1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBN1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16330

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16330

Paralog	Evidence	Comments
Glyma04g38661	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16330 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g156500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16330

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16330

Limit To All Plant Sequences

>Glyma06g16330.1   sequence type=CDS   gene model=Glyma06g16330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACGATTTCGATGGCCTCTTAACCACCGATTTCGGGTTCAAACCCCAAGGCAAATCGGCACCAATGGCAGCATCCAAATCCTCCTCCTCCTCCAACAACAACAAAACTTCCTCTCTCAACTTCGATTTAGGTTCCCGATCCGCTCGTGGCGCCTCCAATTCCTCCGTCAACGCCGCCGCCACTTCCCTCGACGATCTCTTCGGCGACTCCTCCTCCGTCTTTCGCGCCTCCGCCGATTTCCGTTCCAAGCCCGTCAACGACGGACCGGTCTTCGACAAACCGGTCTACGACGAAGACATTTTCGACGGCGTTCCGGGTCTCAAGAGCTCCTCCAAGGTCTTCTACGACGACGTTTTCGCTTCTGGAGGGAGCGCCGCCGCCGCGTTCGACGATCTTCTCGTTGGGTTAGGTAAATCGGAGAAATCGGAGAAGGTGGAGAAAGGTGCCCGGGATTTTGATGACTTGATCTCTGGATTCGGGAGCAGTAAGGCAAAGGCCTCCACTGATAGGACCGTTCCTGATATTAATTTGTCACGAGAACCTACTATCAATGCTTCTAAGACAGCCTCTAGTGCAGCAAACGACCCTTTTAAAGTCTTTGAATCAACTTCAGCCCCAATTGATTCATCCTCAGACTACTTTACGGACCCACTGGAAGAAATTAGTAAATTTACTAGTTCTAGAAGCACAAAAAATGATAGTTCTTCAAATTCTAATGAAGTATATAATGATATTGATCCCTTTGGTGGACTTGGAAATTCTGTACCTGCATTCTCAGCAGAGAGAAATAGCATGAAGGGCAGCAACTCTCCAACGCCAAGGTCAAATACAAGTTCAAGCTGGACCGGAGATAAAGAATCAAATGACAAATCGTCTGTGAGGAGTCCTGAGAGACAAAAACAAAACAAGATTCCTGTTGATCATGATCAGGAATTTCTTCAGGCTGCATTTGACATGCCCATATATTCATCTGATTCTTACAAGCCAGTTGACCAAAGGTCTACTTCCCCTTCATATGATAACAATGGTTTTAGACAGGCTAGTATTCAGGAAGATATGTCTCCAAAATATGAAGAAAAGTTGGAATCAAATGATGATATATGGTTGATGGTATCAGAGATTCCTCTTTTCACTCAGCCAACTGCTGCTCCACCACCTTCAAGACCGCCTCCTCCTCGACCAGTACATATCCCTAAGTCAGGAGCAGGTTCTTCAGCTTCTGCCAATGTCAGAAAGAAGGATAATGAATTTTCTTATTTTCCAAGTTCCAGTCAATTTTCTCAGGGTTCTGAATCTGCTCCTGCTGCAGCCAAGTTATCTTCTGCATCTCAGTTTGATGAACTTGAAGATTTTGCCATGGGAAAGAGTCATGATAATGACGATGAACGTATAAATGGTCTTGCCGACGAAGAATTAGAGATGAACTCAGCTGCTGCAGCTATGAAAGAGGCTATGGATAGAGCTGAAGCTAAATTTAGGCACGCAAAGGGCGTCAGGGAGAGAGAGAATACAAAAGCTTCTAAAAGCAAGGAACCTGTGCAATTGGAAAAAGATGGAAGAGCGGTGTCAGAGGACAGAGGAAAACAGGAAAGGTTAGACCATGAACGGCAACAAAAGGAGAGAGAGGAAAAGGAGCAAAGAAGACGTGAGAAGGAAAGGGAGGAGAAAGAAAGAGAACAACAGAGACTTGAGAGAGAAAGAGAAAAGGCAAGACAGGCTGTGGAAAGAGCTACTAGAGAAGCACGTGAAAGAGCAGCTGTTGAAGCTCGCCGAAGAGCTGAGAGGGCTGCTGTTGAGAAAGCTAACACAGAAGCTAGAAAGCGTGCTGAAAGGGCCGCAGTTCAGAGAGCACAGGCTGAAGCCCGTGAAAGGGCTGCTACTGAGGCAAAGGAAAGGGCCGAAAAGGCTTCCGCGGAGGCAAAGGAAAGGGAAGTGCGGGAAAGAGCTGCAGCTGCAAGAGCTGAACCTGAAGCAAGAGTTAAAGCTGAACGTGCTGCTGTAGAAAGGGCTGCTGCAGAGGCCCGAGAAAGAGCTGCAGCACAGGCCCGAGAAAGAGCTGCAGCTGCTGCAAGGATGAGCCAACAACAGAATGACAATGATCTTGAATCATTTTTCAGCACAGGTGCACGGGCTAACAGTGCTCCAAGGCCTCCTAGGTCCAGCTCTTCAGACTCTGTATTTGATGCCCAATTTCAGTCAGATTTAACCCGGAAATCTACAGGTGTGTCTTCAAGCATGAAGAAAGCATCATCATCCACTAATATTGTTGATGATCTTTCCTCAATTTTTGGAGCTGCTCCATCATCATCTGGAGAGTTTCAGGAAATTGAAGGGGAAACTGAAGAAAGACGAAGAGCCAGGTTGGAACGCCACCAGAGGACTCAGGAGCGTGCGGCTAAAGCACTGGCTGAGAAGAATCAACGGGACCTACAAACTCAAAGAGACCAAGCTGAGAGACATAGGGTTGCTGAAACATTGGATTTTGAAATTAAGCGCTGGGCTGCAGGAAAGGAGGGGAACTTGCGTGCTTTGCTTTCTACCTTACAATATGTTCTGTGGCCTGAATGTGGTTGGCAACCAGTTTCTTTGACTGATTTGATCACTGCTGCTGCTGTTAGAAAGGTTTATAGGAAAGCTACATTGTGCACTCATCCTGATAAAGTACAACAGAAGGGTGCCACTATTCAACAGAAATATATTGCTGAGAAGGTTTTTGATCTACTCAAGGAAGCATGGAATAAGTTCAATTCAGAGGAGCTTTTCTAA

Predicted protein sequences of Glyma06g16330

Limit To All Plant Sequences

>Glyma06g16330.1   sequence type=predicted peptide   gene model=Glyma06g16330   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNDFDGLLTTDFGFKPQGKSAPMAASKSSSSSNNNKTSSLNFDLGSRSARGASNSSVNAAATSLDDLFGDSSSVFRASADFRSKPVNDGPVFDKPVYDEDIFDGVPGLKSSSKVFYDDVFASGGSAAAAFDDLLVGLGKSEKSEKVEKGARDFDDLISGFGSSKAKASTDRTVPDINLSREPTINASKTASSAANDPFKVFESTSAPIDSSSDYFTDPLEEISKFTSSRSTKNDSSSNSNEVYNDIDPFGGLGNSVPAFSAERNSMKGSNSPTPRSNTSSSWTGDKESNDKSSVRSPERQKQNKIPVDHDQEFLQAAFDMPIYSSDSYKPVDQRSTSPSYDNNGFRQASIQEDMSPKYEEKLESNDDIWLMVSEIPLFTQPTAAPPPSRPPPPRPVHIPKSGAGSSASANVRKKDNEFSYFPSSSQFSQGSESAPAAAKLSSASQFDELEDFAMGKSHDNDDERINGLADEELEMNSAAAAMKEAMDRAEAKFRHAKGVRERENTKASKSKEPVQLEKDGRAVSEDRGKQERLDHERQQKEREEKEQRRREKEREEKEREQQRLEREREKARQAVERATREARERAAVEARRRAERAAVEKANTEARKRAERAAVQRAQAEARERAATEAKERAEKASAEAKEREVRERAAAARAEPEARVKAERAAVERAAAEARERAAAQARERAAAAARMSQQQNDNDLESFFSTGARANSAPRPPRSSSSDSVFDAQFQSDLTRKSTGVSSSMKKASSSTNIVDDLSSIFGAAPSSSGEFQEIEGETEERRRARLERHQRTQERAAKALAEKNQRDLQTQRDQAERHRVAETLDFEIKRWAAGKEGNLRALLSTLQYVLWPECGWQPVSLTDLITAAAVRKVYRKATLCTHPDKVQQKGATIQQKYIAEKVFDLLKEAWNKFNSEELF*

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