Glyma06g16300 - SoyBase

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Report for Sequence Feature Glyma06g16300

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12805403
stop:	12815757
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63860	AT	Annotation by Michelle Graham. TAIR10: Regulator of chromosome condensation (RCC1) family protein \| chr5:25554821-25558587 REVERSE LENGTH=440	SoyBase	E_val: 0	ISS
GO:0006007	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose catabolic process	SoyBase	N/A	ISS
GO:0009411	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV	SoyBase	N/A	ISS
GO:0009649	GO-bp	Annotation by Michelle Graham. GO Biological Process: entrainment of circadian clock	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0000785	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chromatin	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003682	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chromatin binding	SoyBase	N/A	ISS
GO:0005085	GO-mf	Annotation by Michelle Graham. GO Molecular Function: guanyl-nucleotide exchange factor activity	SoyBase	N/A	ISS
KOG1427	KOG	Uncharacterized conserved protein, contains RCC1 domain	JGI		ISS
PTHR22870	Panther	REGULATOR OF CHROMOSOME CONDENSATION	JGI		ISS
PTHR22870:SF27	Panther	UVB-RESISTANCE PROTEIN UVR8	JGI		ISS
PF00415	PFAM	Regulator of chromosome condensation (RCC1) repeat	JGI		ISS
UniRef100_G8A1N5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RCC1 and BTB domain-containing protein n=1 Tax=Medicago truncatula RepID=G8A1N5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBN0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBN0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16300

Paralog	Evidence	Comments
Glyma04g38670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g156400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16300

Limit To All Plant Sequences

>Glyma06g16300.1   sequence type=CDS   gene model=Glyma06g16300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGCACTCTTCAAGTCTACTCTTTCTCTCTCCTTCCACTGGTCCCATCAATGTTATAAACCCTTGCCCCTCTTTCTCTTCTCTCTTCCCTCCCATTACCATGGAATTGGAAGTCACCGCCGCTACTTCTCCACCTTCTCGCGTTCTCCTCATCTCCGCCGGTGCCAGCCACACCGTTGCCCTTCTCTCTGGGAATGTTGTGTGCTCGTGGGGTCGCGGAGAGGATGGACAGTTAGGCCATGGTGACACCGATGATAGACTCTTACCCACTCATCTCAGTGCATTGGATGCTCAACAAATTGATTCTATTGCATGTGGAGCTGATCATACCCTTGCGTATTCCGAATCACGCAATGAACTCTATAGTTGGGGATGGGGTGATTTTGGAAGGTTGGGTCATGGCAATTCTAGTGATTTGCTCATTCCTCAGCCTATTATAGCATTGCAAGGTCTAAGGATAAAGCAAATTGCCTGTGGGGATAGCCACTGTTTGGCAGTTACCATGGAAGGCGAGGTTCAGAGTTGGGGGAGGAATCAAAATGGTCAACTTGGACTTGGCACCTCGGAGGATTCTCTTGTGCCACAAAAGATTCAAACATTTCAGGGAGTACCTATCAAAATGGTTGCTGCAGGTGCAGAACACAGTGTAGCTATTACTGAAAATGGAGAACTGTATGGATGGGGTTGGGGCCGATATGGAAATTTGGGGTTGGGGGATAGAAATGATCGCTGGATTCCTGAGAAAGTTTCTTCTGTTGATTGTGACAAGATGGTCATGGTTGCTTGTGGTTGGCGGCATACAATTTCTGTTTCATCTTTGGGTGGCTTATACACATATGGGTGGAGCAAATATGGCCAGTTAGGACATGGAAATTTTGAGGATTCTCTTGTGCCTCAAAAGCTTCAAGCCTTGAGTGATAAGTTAATCAGTCAGGTATCGGGTGGTTGGAGGCATAGTATGGCACTGACGTCTACTGGACTACTATATGGATGGGGTTGGAATAAGTTTGGACAGGTTGGAGTTGGTGACAATGTTGATCGTTGCTCTCCTGTGCAAGTGAAGTTCCCCCATGATCAGAAAGTAGTTCAGATCTCATGTGGGTGGAGACACACAATTGCTGTAACTGAAAAGGAAAATGTATTTTCTTGGGGAAGAGGCACAAATGGGCAACTTGGGCATGGGGATACCGTTGACCGGAATTCTCCAAAGATTATTGAGGCATTGAGTGTGGATGGATCTTCCGGGCCGCACATAGAATCCTCAAACACTGATCTATTGTCAGGGAAAAGTGGTGCCTCCTTATCTGAGAGATATGCAGTTGTTCCGGATGAAACTGTCTCAGGACAAACTGCTAGTTCAAGCAGTGGAGATAGGCTTGATATCAGTGTCCCAGAAAGTGATGTCAAACGGATCCGAGTTTGA

Predicted protein sequences of Glyma06g16300

Limit To All Plant Sequences

>Glyma06g16300.1   sequence type=predicted peptide   gene model=Glyma06g16300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLHSSSLLFLSPSTGPINVINPCPSFSSLFPPITMELEVTAATSPPSRVLLISAGASHTVALLSGNVVCSWGRGEDGQLGHGDTDDRLLPTHLSALDAQQIDSIACGADHTLAYSESRNELYSWGWGDFGRLGHGNSSDLLIPQPIIALQGLRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGTSEDSLVPQKIQTFQGVPIKMVAAGAEHSVAITENGELYGWGWGRYGNLGLGDRNDRWIPEKVSSVDCDKMVMVACGWRHTISVSSLGGLYTYGWSKYGQLGHGNFEDSLVPQKLQALSDKLISQVSGGWRHSMALTSTGLLYGWGWNKFGQVGVGDNVDRCSPVQVKFPHDQKVVQISCGWRHTIAVTEKENVFSWGRGTNGQLGHGDTVDRNSPKIIEALSVDGSSGPHIESSNTDLLSGKSGASLSERYAVVPDETVSGQTASSSSGDRLDISVPESDVKRIRV*

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