Glyma06g16230 - SoyBase

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Report for Sequence Feature Glyma06g16230

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12752460
stop:	12761841
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63910	AT	Annotation by Michelle Graham. TAIR10: farnesylcysteine lyase \| chr5:25572053-25574077 REVERSE LENGTH=500	SoyBase	E_val: 0	ISS
GO:0009738	GO-bp	Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0030327	GO-bp	Annotation by Michelle Graham. GO Biological Process: prenylated protein catabolic process	SoyBase	N/A	ISS
GO:0030328	GO-bp	Annotation by Michelle Graham. GO Biological Process: prenylcysteine catabolic process	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0045338	GO-bp	Annotation by Michelle Graham. GO Biological Process: farnesyl diphosphate metabolic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0001735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: prenylcysteine oxidase activity	SoyBase	N/A	ISS
GO:0016670	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor	SoyBase	N/A	ISS
PTHR15944	Panther	PRENYLCYSTEINE LYASE-RELATED	JGI		ISS
PF01593	PFAM	Flavin containing amine oxidoreductase	JGI		ISS
PF07156	PFAM	Prenylcysteine lyase	JGI		ISS
UniRef100_G7JC57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=G7JC57_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBM2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KBM2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g16230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g16230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16230

Limit To All Plant Sequences

>Glyma06g16230.1   sequence type=CDS   gene model=Glyma06g16230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAAGCCAAGAAGATCAAAGATGATGTCTTTGAAACTCCCTTTCCTGTTGACCTTGTTCCTCGCACTCTCCCAAGCTCAACCGCATTCCGATGATCCACCGCCGCCACCCTCCTCCAACGTCTGCGTCATCGGCGCTGGCATCGGTGGCTCCTCCGTCGCTCACTTCCTCCGCAAATACTCGCCGTCCTCCACTCCCTCCACCAAAATCCGAGTGTTCGAGCGCAACGGCCGCGTCGGGGGACGCATCGCCACCGTGACGGTGGCGGGCGAGACCTTCGAGGCCGGAGCGTCCATTCTCCATCCAAAGAACCTGCACACAGTGGATTACGTTAAGATCCTGAAGCTGAAGGTCAAAGAGCCGACCGCGTCGGAGGATTCCCTCTCTCTCGGCATTTGGGATGGGAACAAGTTCGTTTTCAAAACGGTGTCGCCGCTTAGTTCCACTGTTCCCCTCATCGATAAGCTTCTCAAACTTCCGTTTGTTAATACTCTCGTATCGTTCGTTAATTCCGCACTCATGTTCGTTCGCTACGGCTTCTCGCTCTTTAAGATGCAGAACTTCGTTGAGATTGCTGTGGATAAATTCGTAAAGTACTATGAAGATCCTGGTTCAAGACCTATTTTTGAGACTGTGGATGAGATGCTGCAGTGGGCTGGTCTGTATAATCTTACTACCAGGACTTTGCGGGATGAATTGGTGGATGCTGGGTTGTCTACCTCGTTGATCAATGAACTTGTTACTGTCATCACACGCATTAATTATGGCCAGAGTGTCTCCATGAGTGGGTTGGGTGGTGTGGTTTCTCTAGCAGGATCAGGTGGAGGATTATGGTCCATCGAAGGAGGCAACTGGCAAATGGCTGCTGGACTGATTAATCAGTCAGATGTGGCATTACACCTGCATGAAGAAATAAAATCTGTTGCTGACCTTGGAGATTACTACGAACTCAACTCAACAAAAGGAAACAGTTACAGATGTGAAGTTGCTGTGGTTGCTACACCACTGGATGAGTTAGATATTCAATTTATTCCTCCAATTTCAATTCCTGAGAGAAAATTACAGCACACATTTACAACTTTTGTCAGGGGCCTTCTAAACCCTGCATATTTTGGTCTGAAGGCTGTGACAAAAATTCCAGATCTTGTGGGCACAATAGAGGACCCTGAGCTTCCATTTTCATGCATTGCAGTTCTCAAGAAGCACAATGAAAAAGAATCTACTTATAAATTATTTTCTCGTCAACCAATGGCAGACACATTACTGGATAGCATCTTCAGTGTGAGGAAGGAGACCATTCGGATAAACTGGGCTGCATATCCTCATTACCACGCCCCAGAAGTATTTGCACCATTTATATTGGACGGGCGACATCTATACTACGTTAATGCATTTGAAAATGCAGCTAGCACCATGGAGACAAGTGCTGTGGCAGCTGAGAATATTGCCCGACTCATACTGTCAAGATATTTTGGCCAAGTAATTGTGCATTCATCTAATTTGTCTGCAAGTTCTCAAGGAGAGGGTACTCATTTAGATTTGTGA

Predicted protein sequences of Glyma06g16230

Limit To All Plant Sequences

>Glyma06g16230.1   sequence type=predicted peptide   gene model=Glyma06g16230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKPRRSKMMSLKLPFLLTLFLALSQAQPHSDDPPPPPSSNVCVIGAGIGGSSVAHFLRKYSPSSTPSTKIRVFERNGRVGGRIATVTVAGETFEAGASILHPKNLHTVDYVKILKLKVKEPTASEDSLSLGIWDGNKFVFKTVSPLSSTVPLIDKLLKLPFVNTLVSFVNSALMFVRYGFSLFKMQNFVEIAVDKFVKYYEDPGSRPIFETVDEMLQWAGLYNLTTRTLRDELVDAGLSTSLINELVTVITRINYGQSVSMSGLGGVVSLAGSGGGLWSIEGGNWQMAAGLINQSDVALHLHEEIKSVADLGDYYELNSTKGNSYRCEVAVVATPLDELDIQFIPPISIPERKLQHTFTTFVRGLLNPAYFGLKAVTKIPDLVGTIEDPELPFSCIAVLKKHNEKESTYKLFSRQPMADTLLDSIFSVRKETIRINWAAYPHYHAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRYFGQVIVHSSNLSASSQGEGTHLDL*

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