SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G63910 | AT | Annotation by Michelle Graham. TAIR10: farnesylcysteine lyase | chr5:25572053-25574077 REVERSE LENGTH=500 | SoyBase | E_val: 0 | ISS |
| GO:0009738 | GO-bp | Annotation by Michelle Graham. GO Biological Process: abscisic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0030327 | GO-bp | Annotation by Michelle Graham. GO Biological Process: prenylated protein catabolic process | SoyBase | N/A | ISS |
| GO:0030328 | GO-bp | Annotation by Michelle Graham. GO Biological Process: prenylcysteine catabolic process | SoyBase | N/A | ISS |
| GO:0042744 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process | SoyBase | N/A | ISS |
| GO:0045338 | GO-bp | Annotation by Michelle Graham. GO Biological Process: farnesyl diphosphate metabolic process | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0001735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: prenylcysteine oxidase activity | SoyBase | N/A | ISS |
| GO:0016670 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor | SoyBase | N/A | ISS |
| PTHR15944 | Panther | PRENYLCYSTEINE LYASE-RELATED | JGI | ISS | |
| PF01593 | PFAM | Flavin containing amine oxidoreductase | JGI | ISS | |
| PF07156 | PFAM | Prenylcysteine lyase | JGI | ISS | |
| UniRef100_G7JC57 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=G7JC57_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KBM2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KBM2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g16230 not represented in the dataset |
Glyma06g16230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g16230.1 sequence type=CDS gene model=Glyma06g16230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAAAGCCAAGAAGATCAAAGATGATGTCTTTGAAACTCCCTTTCCTGTTGACCTTGTTCCTCGCACTCTCCCAAGCTCAACCGCATTCCGATGATCCACCGCCGCCACCCTCCTCCAACGTCTGCGTCATCGGCGCTGGCATCGGTGGCTCCTCCGTCGCTCACTTCCTCCGCAAATACTCGCCGTCCTCCACTCCCTCCACCAAAATCCGAGTGTTCGAGCGCAACGGCCGCGTCGGGGGACGCATCGCCACCGTGACGGTGGCGGGCGAGACCTTCGAGGCCGGAGCGTCCATTCTCCATCCAAAGAACCTGCACACAGTGGATTACGTTAAGATCCTGAAGCTGAAGGTCAAAGAGCCGACCGCGTCGGAGGATTCCCTCTCTCTCGGCATTTGGGATGGGAACAAGTTCGTTTTCAAAACGGTGTCGCCGCTTAGTTCCACTGTTCCCCTCATCGATAAGCTTCTCAAACTTCCGTTTGTTAATACTCTCGTATCGTTCGTTAATTCCGCACTCATGTTCGTTCGCTACGGCTTCTCGCTCTTTAAGATGCAGAACTTCGTTGAGATTGCTGTGGATAAATTCGTAAAGTACTATGAAGATCCTGGTTCAAGACCTATTTTTGAGACTGTGGATGAGATGCTGCAGTGGGCTGGTCTGTATAATCTTACTACCAGGACTTTGCGGGATGAATTGGTGGATGCTGGGTTGTCTACCTCGTTGATCAATGAACTTGTTACTGTCATCACACGCATTAATTATGGCCAGAGTGTCTCCATGAGTGGGTTGGGTGGTGTGGTTTCTCTAGCAGGATCAGGTGGAGGATTATGGTCCATCGAAGGAGGCAACTGGCAAATGGCTGCTGGACTGATTAATCAGTCAGATGTGGCATTACACCTGCATGAAGAAATAAAATCTGTTGCTGACCTTGGAGATTACTACGAACTCAACTCAACAAAAGGAAACAGTTACAGATGTGAAGTTGCTGTGGTTGCTACACCACTGGATGAGTTAGATATTCAATTTATTCCTCCAATTTCAATTCCTGAGAGAAAATTACAGCACACATTTACAACTTTTGTCAGGGGCCTTCTAAACCCTGCATATTTTGGTCTGAAGGCTGTGACAAAAATTCCAGATCTTGTGGGCACAATAGAGGACCCTGAGCTTCCATTTTCATGCATTGCAGTTCTCAAGAAGCACAATGAAAAAGAATCTACTTATAAATTATTTTCTCGTCAACCAATGGCAGACACATTACTGGATAGCATCTTCAGTGTGAGGAAGGAGACCATTCGGATAAACTGGGCTGCATATCCTCATTACCACGCCCCAGAAGTATTTGCACCATTTATATTGGACGGGCGACATCTATACTACGTTAATGCATTTGAAAATGCAGCTAGCACCATGGAGACAAGTGCTGTGGCAGCTGAGAATATTGCCCGACTCATACTGTCAAGATATTTTGGCCAAGTAATTGTGCATTCATCTAATTTGTCTGCAAGTTCTCAAGGAGAGGGTACTCATTTAGATTTGTGA
>Glyma06g16230.1 sequence type=predicted peptide gene model=Glyma06g16230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAKPRRSKMMSLKLPFLLTLFLALSQAQPHSDDPPPPPSSNVCVIGAGIGGSSVAHFLRKYSPSSTPSTKIRVFERNGRVGGRIATVTVAGETFEAGASILHPKNLHTVDYVKILKLKVKEPTASEDSLSLGIWDGNKFVFKTVSPLSSTVPLIDKLLKLPFVNTLVSFVNSALMFVRYGFSLFKMQNFVEIAVDKFVKYYEDPGSRPIFETVDEMLQWAGLYNLTTRTLRDELVDAGLSTSLINELVTVITRINYGQSVSMSGLGGVVSLAGSGGGLWSIEGGNWQMAAGLINQSDVALHLHEEIKSVADLGDYYELNSTKGNSYRCEVAVVATPLDELDIQFIPPISIPERKLQHTFTTFVRGLLNPAYFGLKAVTKIPDLVGTIEDPELPFSCIAVLKKHNEKESTYKLFSRQPMADTLLDSIFSVRKETIRINWAAYPHYHAPEVFAPFILDGRHLYYVNAFENAASTMETSAVAAENIARLILSRYFGQVIVHSSNLSASSQGEGTHLDL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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