Glyma06g16220 - SoyBase

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Report for Sequence Feature Glyma06g16220

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12745799
stop:	12749904
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G39450	AT	Annotation by Michelle Graham. TAIR10: F-box family protein \| chr5:15786045-15787877 FORWARD LENGTH=579	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00646	PFAM	F-box domain	JGI		ISS
UniRef100_G7JC57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CCP n=1 Tax=Medicago truncatula RepID=G7JC57_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBM0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBM0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g16220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma06g16220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g16220

Limit To All Plant Sequences

>Glyma06g16220.2   sequence type=transcript   gene model=Glyma06g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTGACTCAGTGCTTGAACTTTCTTGGGTCTTGGCATCTACTTTAAGCTTTGCTACTCAACATTAGTTGGGAATTGGGTGTGTCACAGAGAGAAATAAAGAAACCGAGAAAAGACAGCGATGCAACCAACGCTCCCTCTCCTCCTTGTACGCTTTCACACACATCCCTACCTTCTTCATCCTCGTTCGACAATCTTTTGAACAAACCCTTCTTTCTTCTCATCATCGCCTTTTCTTTTCCACCGCCACTTTTTTTTTTTTTCAATTCGCTTCATTTCTGGCAAACTGTCTCTGTCACACACCCAATAATTGAACTCACCGAACCAAACCCCTCTCTCTCAATCACCGAACAGCAATTTCTTCACTCTACTCCTTTCAAGTTTAGGGCTTTTCCCACGTGCTGCCCCAAGAACACTGATTTCCAGGGTTTGTTCTTCCCCCACCCAACCCTTTTCGTTTTTCTCTATTTCTAATCATGGGTATGCGCTGAAGTGTGGAAATTTTTAATTTTTATTTTCTCGGATCGGCATGGAACCCGAACATCATGATTCTTCGAACATGCTTTTGTTTCTTCCCGATGATGTTTTCGCCATCGTTTCTCGGTTCATGTCGCCGAGAGATGTGTGCAATCTTTGCCTATGCTGCAAGAGCTTAAACGCTCTTGTGGCATCCGAGAAACTCTGGCTCACGCAATGTGACTTATTGAGCACAGTGCCTCACAAGGACCTTGTGGAATGGAGAAAGGGTGTGGCTTCTTACAAAGCGCTTTGTCGTTTTCTGATGAGTGTGAAACCTTTGATTGGAATATGGGTTCATCAAAATCCTGAGCTTGGGAACGTGGTGTATGTGATGCCGGGTTTTGTTTCTGTTGTTGGGTGCAGGATAATCCCTCAGGAGCTTGGTCCTTTGGGGATCGAAGAGGGTCCTATACTGTGGGCTTCTGTGTTTGAGGTTGTTAGTGACTTGGATGGTTCCATGATGTTTTTCCTTCATGGGAGGGAGAAGGGGGTGAATTATGTTTATCCGGGTTCGGTCAAGGTTGCGGACAGGTCCTGCAATGTGCTGTTGCTTGAGGTTGAACCCGGGGGTTGTAGGAATGTTAGTGCTTTGTTGCAGAGTAAGAGTTTTGTGCACCACTCGGGCGTGGAGGAGTCGTCGTCGTCGAGGAAGGTTTGTAGGTCAAATAGCGATGTTTCTAGTTCACAAAGGGTGGTTGGAAATGGTGAAGGGATGGTTAGTTTTGGGAAGTTAGCTTTCAGTGATAGGAGGAAGTTGCTTGAGGTTACTACTAGTCAGGTTCGGCAAAAGGTTCCAGATAAGATGATCGGACCGTTGTTTCCTGGGTTGAGGGATGATGAGGAGAATTTTCAGAAGGATTTGGTGCTTCTGTGGAAAAGGAGATCACTTCTTAGTCAAATGTATAAGGTTGGTAGTGGTCAGAATGATGAGTATAAGACGAGTTCTCAAGAGGCGGTTGATCCAACGCAGTTAGAATTGGATGATGTTAGGGCGAGTTTTGACCGTTCAAGGTCTATCTCTCATCCTCTGCCTGAGGAGGATGGTCACACTCAATGCATCAAGAGGAAGGGTTTTCGGGGATATGTCTGGAATGGCATTAAACAAATCCTTGGAAGATCGAATACGATGAATGCAAGTCCGTTAGTTGCCAAGAAGCATACTTCAAACGGCGAGATTAGGCAGGCGCGGCTTCAAGAATTTCTTAGATCAAGTGACACAGTAAGACTAATGTTAAAAGCTTCAACTGTGAAGCTATCTTCGTATCGAGCATGGCCAAATATGCATGACAGTCGGTTTGCGCTTTACAAGTTGCCATTGCGGGTTCCCAAAGATGACCAAGAATATGCTGGTTTATGGGGAGGAACTTTTGGTTGGCCTCCTGGAAAGCCTTCTGAAGACAAGCCTGGAAAGGCTTTATTCTTTCTTCTGCTCTCTTATGAGGAGTTCCAGGGACAACAGCTTCTCATTGCAACAAAAATTTTGGAAGGCACACACTATGTGTTACATCCTAACGGTTCAGCAATGTTTACAGCAAATATCAATGATCCTTCATCCGAACCCTTTCCCTGGGACACTGATGCAGACTCGGTTCCAGTGAATATCAAGCAAGCTTTCGTGGGAGAGGGTATTGCAAGTGGTTACGGGTTCAGATACCCTGGATCAAAGCCTGGTTCCCTCTTTGTTTTAGAAAATGGTATCCTTGCCTTCATTTGGAAGGAGTCAAGGGCTGTTTTGAACTTGCAAAGACTTAACTTGCAAGAACTTTTGAAGAAGGGTGAAAGGGTACCTTCTCTGCCTCCGGTTACCAATTTTTCATATCTGACAAAGTCCTACTCGAATGTGTTTGCTGGCTTCCCTAGCTCTTCCAATTTTTTGTCTTCACCAAGGAATGCACAATACTAGTATATTAGTGGGGCCTAGGATGTGGGCCCAGATTAGTATGGATTGACAAAGAGACTATATCCTATAAGCTTCCTAGCTGTCGGTGGTTTCGGGAATTGCATTGCTTGTGGCTGTCAGAGAGTACACTTCCCTGCTGTTATATTTACATGTTGTTGCTTCTTGTGAGACCAAAGATGTAGGTAACATTTGTCAAGTAATGTATTATGTATTGCTTTTGTTGTGAATTAGAATCTCATGTTTTATAGGGTATATCAGGCTGTTTGTTGTGATATATGCGGAAGAAAGTATAAATTGAGAATCCTCATAGGCTTTCTCTCTACATTTGATATATAATTTGACATAATTTCACCCTTGTGTGCTAGATGGGTTACATTTTCTGAACATAATAGCGCATACATGGTTTCACGGTGATCGGATATAAGTTTGAGGATATGCTAGG

Coding sequences of Glyma06g16220

Limit To All Plant Sequences

>Glyma06g16220.1   sequence type=CDS   gene model=Glyma06g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCCGAACATCATGATTCTTCGAACATGCTTTTGTTTCTTCCCGATGATGTTTTCGCCATCGTTTCTCGGTTCATGTCGCCGAGAGATGTGTGCAATCTTTGCCTATGCTGCAAGAGCTTAAACGCTCTTGTGGCATCCGAGAAACTCTGGCTCACGCAATGTGACTTATTGAGCACAGTGCCTCACAAGGACCTTGTGGAATGGAGAAAGGGTGTGGCTTCTTACAAAGCGCTTTGTCGTTTTCTGATGAGTGTGAAACCTTTGATTGGAATATGGGTTCATCAAAATCCTGAGCTTGGGAACGTGGTGTATGTGATGCCGGGTTTTGTTTCTGTTGTTGGGTGCAGGATAATCCCTCAGGAGCTTGGTCCTTTGGGGATCGAAGAGGGTCCTATACTGTGGGCTTCTGTGTTTGAGGTTGTTAGTGACTTGGATGGTTCCATGATGTTTTTCCTTCATGGGAGGGAGAAGGGGGTGAATTATGTTTATCCGGGTTCGGTCAAGGTTGCGGACAGGTCCTGCAATGTGCTGTTGCTTGAGGTTGAACCCGGGGGTTGTAGGAATGTTAGTGCTTTGTTGCAGAGTAAGAGTTTTGTGCACCACTCGGGCGTGGAGGAGTCGTCGTCGTCGAGGAAGGTTTGTAGGTCAAATAGCGATGTTTCTAGTTCACAAAGGGTGGTTGGAAATGGTGAAGGGATGGTTAGTTTTGGGAAGTTAGCTTTCAGTGATAGGAGGAAGTTGCTTGAGGTTACTACTAGTCAGGTTCGGCAAAAGGTTCCAGATAAGATGATCGGACCGTTGTTTCCTGGGTTGAGGGATGATGAGGAGAATTTTCAGAAGGATTTGGTGCTTCTGTGGAAAAGGAGATCACTTCTTAGTCAAATGTATAAGGTTGGTAGTGGTCAGAATGATGAGTATAAGACGAGTTCTCAAGAGGCGGTTGATCCAACGCAGTTAGAATTGGATGATGTTAGGGCGAGTTTTGACCGTTCAAGGTCTATCTCTCATCCTCTGCCTGAGGAGGATGGTCACACTCAATGCATCAAGAGGAAGGGTTTTCGGGGATATGTCTGGAATGGCATTAAACAAATCCTTGGAAGATCGAATACGATGAATGCAAGTCCGTTAGTTGCCAAGAAGCATACTTCAAACGGCGAGATTAGGCAGGCGCGGCTTCAAGAATTTCTTAGATCAAGTGACACAGTAAGACTAATGTTAAAAGCTTCAACTGTGAAGCTATCTTCGTATCGAGCATGGCCAAATATGCATGACAGTCGGTTTGCGCTTTACAAGTTGCCATTGCGGGTTCCCAAAGATGACCAAGAATATGCTGGTTTATGGGGAGGAACTTTTGGTTGGCCTCCTGGAAAGCCTTCTGAAGACAAGCCTGGAAAGGCTTTATTCTTTCTTCTGCTCTCTTATGAGGAGTTCCAGGGACAACAGCTTCTCATTGCAACAAAAATTTTGGAAGGCACACACTATGTGTTACATCCTAACGGTTCAGCAATGTTTACAGCAAATATCAATGATCCTTCATCCGAACCCTTTCCCTGGGACACTGATGCAGACTCGGTTCCAGTGAATATCAAGCAAGCTTTCGTGGGAGAGGGTATTGCAAGTGGTTACGGGTTCAGATACCCTGGATCAAAGCCTGGTTCCCTCTTTGTTTTAGAAAATGGTATCCTTGCCTTCATTTGGAAGGAGTCAAGGGCTGTTTTGAACTTGCAAAGACTTAACTTGCAAGAACTTTTGAAGAAGGGTGAAAGGGTACCTTCTCTGCCTCCGGTTACCAATTTTTCATATCTGACAAAGTCCTACTCGAATGTGTTTGCTGGCTTCCCTAGCTCTTCCAATTTTTTGTCTTCACCAAGGTTTGCCTTAACCCTGACATGA

>Glyma06g16220.2   sequence type=CDS   gene model=Glyma06g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACCCGAACATCATGATTCTTCGAACATGCTTTTGTTTCTTCCCGATGATGTTTTCGCCATCGTTTCTCGGTTCATGTCGCCGAGAGATGTGTGCAATCTTTGCCTATGCTGCAAGAGCTTAAACGCTCTTGTGGCATCCGAGAAACTCTGGCTCACGCAATGTGACTTATTGAGCACAGTGCCTCACAAGGACCTTGTGGAATGGAGAAAGGGTGTGGCTTCTTACAAAGCGCTTTGTCGTTTTCTGATGAGTGTGAAACCTTTGATTGGAATATGGGTTCATCAAAATCCTGAGCTTGGGAACGTGGTGTATGTGATGCCGGGTTTTGTTTCTGTTGTTGGGTGCAGGATAATCCCTCAGGAGCTTGGTCCTTTGGGGATCGAAGAGGGTCCTATACTGTGGGCTTCTGTGTTTGAGGTTGTTAGTGACTTGGATGGTTCCATGATGTTTTTCCTTCATGGGAGGGAGAAGGGGGTGAATTATGTTTATCCGGGTTCGGTCAAGGTTGCGGACAGGTCCTGCAATGTGCTGTTGCTTGAGGTTGAACCCGGGGGTTGTAGGAATGTTAGTGCTTTGTTGCAGAGTAAGAGTTTTGTGCACCACTCGGGCGTGGAGGAGTCGTCGTCGTCGAGGAAGGTTTGTAGGTCAAATAGCGATGTTTCTAGTTCACAAAGGGTGGTTGGAAATGGTGAAGGGATGGTTAGTTTTGGGAAGTTAGCTTTCAGTGATAGGAGGAAGTTGCTTGAGGTTACTACTAGTCAGGTTCGGCAAAAGGTTCCAGATAAGATGATCGGACCGTTGTTTCCTGGGTTGAGGGATGATGAGGAGAATTTTCAGAAGGATTTGGTGCTTCTGTGGAAAAGGAGATCACTTCTTAGTCAAATGTATAAGGTTGGTAGTGGTCAGAATGATGAGTATAAGACGAGTTCTCAAGAGGCGGTTGATCCAACGCAGTTAGAATTGGATGATGTTAGGGCGAGTTTTGACCGTTCAAGGTCTATCTCTCATCCTCTGCCTGAGGAGGATGGTCACACTCAATGCATCAAGAGGAAGGGTTTTCGGGGATATGTCTGGAATGGCATTAAACAAATCCTTGGAAGATCGAATACGATGAATGCAAGTCCGTTAGTTGCCAAGAAGCATACTTCAAACGGCGAGATTAGGCAGGCGCGGCTTCAAGAATTTCTTAGATCAAGTGACACAGTAAGACTAATGTTAAAAGCTTCAACTGTGAAGCTATCTTCGTATCGAGCATGGCCAAATATGCATGACAGTCGGTTTGCGCTTTACAAGTTGCCATTGCGGGTTCCCAAAGATGACCAAGAATATGCTGGTTTATGGGGAGGAACTTTTGGTTGGCCTCCTGGAAAGCCTTCTGAAGACAAGCCTGGAAAGGCTTTATTCTTTCTTCTGCTCTCTTATGAGGAGTTCCAGGGACAACAGCTTCTCATTGCAACAAAAATTTTGGAAGGCACACACTATGTGTTACATCCTAACGGTTCAGCAATGTTTACAGCAAATATCAATGATCCTTCATCCGAACCCTTTCCCTGGGACACTGATGCAGACTCGGTTCCAGTGAATATCAAGCAAGCTTTCGTGGGAGAGGGTATTGCAAGTGGTTACGGGTTCAGATACCCTGGATCAAAGCCTGGTTCCCTCTTTGTTTTAGAAAATGGTATCCTTGCCTTCATTTGGAAGGAGTCAAGGGCTGTTTTGAACTTGCAAAGACTTAACTTGCAAGAACTTTTGAAGAAGGGTGAAAGGGTACCTTCTCTGCCTCCGGTTACCAATTTTTCATATCTGACAAAGTCCTACTCGAATGTGTTTGCTGGCTTCCCTAGCTCTTCCAATTTTTTGTCTTCACCAAGGAATGCACAATACTAG

Predicted protein sequences of Glyma06g16220

Limit To All Plant Sequences

>Glyma06g16220.1   sequence type=predicted peptide   gene model=Glyma06g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPEHHDSSNMLLFLPDDVFAIVSRFMSPRDVCNLCLCCKSLNALVASEKLWLTQCDLLSTVPHKDLVEWRKGVASYKALCRFLMSVKPLIGIWVHQNPELGNVVYVMPGFVSVVGCRIIPQELGPLGIEEGPILWASVFEVVSDLDGSMMFFLHGREKGVNYVYPGSVKVADRSCNVLLLEVEPGGCRNVSALLQSKSFVHHSGVEESSSSRKVCRSNSDVSSSQRVVGNGEGMVSFGKLAFSDRRKLLEVTTSQVRQKVPDKMIGPLFPGLRDDEENFQKDLVLLWKRRSLLSQMYKVGSGQNDEYKTSSQEAVDPTQLELDDVRASFDRSRSISHPLPEEDGHTQCIKRKGFRGYVWNGIKQILGRSNTMNASPLVAKKHTSNGEIRQARLQEFLRSSDTVRLMLKASTVKLSSYRAWPNMHDSRFALYKLPLRVPKDDQEYAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEEFQGQQLLIATKILEGTHYVLHPNGSAMFTANINDPSSEPFPWDTDADSVPVNIKQAFVGEGIASGYGFRYPGSKPGSLFVLENGILAFIWKESRAVLNLQRLNLQELLKKGERVPSLPPVTNFSYLTKSYSNVFAGFPSSSNFLSSPRFALTLT*

>Glyma06g16220.2   sequence type=predicted peptide   gene model=Glyma06g16220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEPEHHDSSNMLLFLPDDVFAIVSRFMSPRDVCNLCLCCKSLNALVASEKLWLTQCDLLSTVPHKDLVEWRKGVASYKALCRFLMSVKPLIGIWVHQNPELGNVVYVMPGFVSVVGCRIIPQELGPLGIEEGPILWASVFEVVSDLDGSMMFFLHGREKGVNYVYPGSVKVADRSCNVLLLEVEPGGCRNVSALLQSKSFVHHSGVEESSSSRKVCRSNSDVSSSQRVVGNGEGMVSFGKLAFSDRRKLLEVTTSQVRQKVPDKMIGPLFPGLRDDEENFQKDLVLLWKRRSLLSQMYKVGSGQNDEYKTSSQEAVDPTQLELDDVRASFDRSRSISHPLPEEDGHTQCIKRKGFRGYVWNGIKQILGRSNTMNASPLVAKKHTSNGEIRQARLQEFLRSSDTVRLMLKASTVKLSSYRAWPNMHDSRFALYKLPLRVPKDDQEYAGLWGGTFGWPPGKPSEDKPGKALFFLLLSYEEFQGQQLLIATKILEGTHYVLHPNGSAMFTANINDPSSEPFPWDTDADSVPVNIKQAFVGEGIASGYGFRYPGSKPGSLFVLENGILAFIWKESRAVLNLQRLNLQELLKKGERVPSLPPVTNFSYLTKSYSNVFAGFPSSSNFLSSPRNAQY*

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