Glyma06g16090 - SoyBase

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Report for Sequence Feature Glyma06g16090

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12648140
stop:	12652340
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16090

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63970	AT	Annotation by Michelle Graham. TAIR10: Copine (Calcium-dependent phospholipid-binding protein) family \| chr5:25607006-25608916 REVERSE LENGTH=367	SoyBase	E_val: 1.00E-100	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009690	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin metabolic process	SoyBase	N/A	ISS
GO:0009867	GO-bp	Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10857	Panther	COPINE	JGI		ISS
PTHR10857:SF11	Panther	COPINE	JGI		ISS
PF07002	PFAM	Copine	JGI		ISS
UniRef100_G7JC45	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase mib1 n=1 Tax=Medicago truncatula RepID=G7JC45_MEDTR	SoyBase	E_val: 3.00E-147	ISS
UniRef100_I1KBL2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBL2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16090

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16090

Paralog	Evidence	Comments
Glyma04g38830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16090 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g155100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16090

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16090

Limit To All Plant Sequences

>Glyma06g16090.2   sequence type=CDS   gene model=Glyma06g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGAGTCTCAAGATAATTTTTACCAACATCCCCCTTCTTATAATAATAGCTATCATCAACCGTCTCCTTATGCTGAGAATTCAGAGAATAATACCTATCATGAACCATCTTCTTATGCTGGGACTTCATCAAATACTAGCTATTATCAACCCTCTACTCATCCTGGGAGCAAGCACTCATTCCATCGAAAAAGCCTTCATCATATTGGAAACATTCCTAATCCATATGAGCAAGCAATCTCCATCATTGGCCATACTCTGTCTTCCTTTGATGAAGACAATCTAATACCATGTTTTGGATTTGGTGATGATAATAGATTTTGTCATGGTTTTGAGGAAGTACTTGCACGCTACAGAGAGATTGGTCCATACATAAAACTGTCAGAGCTCTTTGATAGCAGATGCTTCAGGATTTATTTCCTGTATAGACTTTCCAATTTCTTATTTCAAGTCTTCTCTGTAAACTTTGAGAACTTTTTTTTTATCAGATTAGCCAAAGCTCCTTCTAAGGTTATGATTTTTGCTTGGATGGTGGTAACCAGAAATCCAGATGTACCACGTGGAAAACTTAGTCCACAAGCACAAGCAACAATTAGTTCTATCGCTGCTGCAAGTCACTATCCTCTCTCAATTATTTTGGTTGGCGTTGGAGATGGACCATGGGATGAGATGAAGCACTTTGATGATAACATTTCTGAGCGCTTATTTGACAACTTTCAGTATAGGGTGTTCAAAATGAGTATCAACACTGGAAATTTTTCAGCTGCTGCCCTTATGGAAATTCCATTTCAGTACCGGGCAGCCCAAAATATACAACTTAACGATAGAGAATCAGTTCTTCATCAACATAAAAGGCCTTTCCCTCCACCTAATGAAGCAATAGATCATGATAATGCACGCATGGCAATTCCACACATGACAAATTTGGAATCAGCGGAACCGACAGCTCCAGCTGCTGTCGAACCAGTATGCCCCATTTGCCTAACCAACCCGAAGGACATGGCTTCTGGATGTGGTCATACAACTTGCAAGGAGTGTGGCTCGACATTATCTTCCTGCTCTATGTGCCGGCAGCAAATTACAACTCCCCCGAGACTGTACACTTGGGTGAGGAAGCTTATCTGA

Predicted protein sequences of Glyma06g16090

Limit To All Plant Sequences

>Glyma06g16090.2   sequence type=predicted peptide   gene model=Glyma06g16090   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYESQDNFYQHPPSYNNSYHQPSPYAENSENNTYHEPSSYAGTSSNTSYYQPSTHPGSKHSFHRKSLHHIGNIPNPYEQAISIIGHTLSSFDEDNLIPCFGFGDDNRFCHGFEEVLARYREIGPYIKLSELFDSRCFRIYFLYRLSNFLFQVFSVNFENFFFIRLAKAPSKVMIFAWMVVTRNPDVPRGKLSPQAQATISSIAAASHYPLSIILVGVGDGPWDEMKHFDDNISERLFDNFQYRVFKMSINTGNFSAAALMEIPFQYRAAQNIQLNDRESVLHQHKRPFPPPNEAIDHDNARMAIPHMTNLESAEPTAPAAVEPVCPICLTNPKDMASGCGHTTCKECGSTLSSCSMCRQQITTPPRLYTWVRKLI*

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