Glyma06g16080 - SoyBase

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Report for Sequence Feature Glyma06g16080

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12616013
stop:	12620626
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g16080

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07200	AT	Annotation by Michelle Graham. TAIR10: gibberellin 20-oxidase 3 \| chr5:2243835-2245157 REVERSE LENGTH=380	SoyBase	E_val: 2.00E-129	ISS
GO:0009062	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid catabolic process	SoyBase	N/A	ISS
GO:0009686	GO-bp	Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process	SoyBase	N/A	ISS
GO:0016114	GO-bp	Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
GO:0016706	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	SoyBase	N/A	ISS
GO:0045544	GO-mf	Annotation by Michelle Graham. GO Molecular Function: gibberellin 20-oxidase activity	SoyBase	N/A	ISS
KOG0143	KOG	Iron/ascorbate family oxidoreductases	JGI		ISS
PTHR10209	Panther	FE(II)/ ASCORBATE OXIDASE SUPERFAMILY	JGI		ISS
PTHR10209:SF55	Panther	OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEI	JGI		ISS
PF03171	PFAM	2OG-Fe(II) oxygenase superfamily	JGI		ISS
UniRef100_G7JC43	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin 20 oxidase n=1 Tax=Medicago truncatula RepID=G7JC43_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A45E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A45E related cluster n=1 Tax=unknown RepID=UPI000233A45E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g16080

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g16080

Paralog	Evidence	Comments
Glyma04g38850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g16080 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g155000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g16080

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g16080

Limit To All Plant Sequences

>Glyma06g16080.1   sequence type=CDS   gene model=Glyma06g16080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCTCCCCTAATGGAATTAAGTGCTTCCACTCTAGTACTTTACCCTGCATCACAGCCACCACAAGAGCCTAAAAATGAGAACAATGGGGGCATAGTTTTTGACTCAAAAAATTTGCAGCAAATGCAAGGGGAAATGCCCAAAGAGTTCCTTTGGCCTTCTAGGGACTTGGTTGACACCACCCAAGAGGAGCTAAAGGAACCCCTTGTGGACCTAGCAATCTTTAAGAATGGTGACGAGAAAGCTATTTCCAATGCAGCAGAGCTTGTGAGAAAAGCATGCTTGAAGCATGGGTTTTTCCAAGTGATAAACCATGGTGTGGACCCAGATCTCATTGATGCTGCATATCATGAAATTGACTCCATTTTTAAGCTCCCATTGAGCAAAAAGATGGGTGCTAAGAGAAAACCTGGTGGTGTCTCAGGGTACTCTGGTGCTCATGCAGATCGTTATTCGTCCAAGTTGCCATGGAAAGAGACGTTTTCTTTCCTCTATGATCACCAAAGCTTCTCCAACTCCCAGATTGTTGACTACTTCAAGTCTGTGTTAGGGGAGGATCTTCAACACACAGGGAGGGTATATCAAAAGTACTGCGAGGCAATGAAGGATTTATCTTTAGTAATTATGGAGCTATTGGGTATTAGTTTGGATGGTGACTCAATAATGAGGTGCAACTATTATCCACCTTGCAACAGAGCGAACCTCACCTTAGGCACTGGCCCTCACACTGATCCAACCTCACTAACCATTCTTCATCAAGACCAAGTTGGAGGTTTAGAAGTTTTTGTAGATAACAAATGGCTCGCTGTTCGCCCTCGATCTGAAGCCTTAGTCATAAACATAGGTGATACTTTCATGGCATTGTCAAATGGGAGATACAAGAGTTGTCTACACAGGGCATTGGTGAACACATACAGGGAGAGAAGGTCCCTTGTTTATTTTGTGTGTCCAAGAGAAGACAAAATAGTGAGGCCCCCAGACAATTTGTTATGCAGAAATGAGGAAAGGAAGTACCCTGATTTCACATGGTCCAATTTGTTTGAATTCACACAGAAGCACTATAGGGCTGATGTTGCTACCCTCCAAAGCTTCATTGAGTGGCAGCAATGCTCTAATTCCAACCCTTCCAACTTCTAG

Predicted protein sequences of Glyma06g16080

Limit To All Plant Sequences

>Glyma06g16080.1   sequence type=predicted peptide   gene model=Glyma06g16080   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPPLMELSASTLVLYPASQPPQEPKNENNGGIVFDSKNLQQMQGEMPKEFLWPSRDLVDTTQEELKEPLVDLAIFKNGDEKAISNAAELVRKACLKHGFFQVINHGVDPDLIDAAYHEIDSIFKLPLSKKMGAKRKPGGVSGYSGAHADRYSSKLPWKETFSFLYDHQSFSNSQIVDYFKSVLGEDLQHTGRVYQKYCEAMKDLSLVIMELLGISLDGDSIMRCNYYPPCNRANLTLGTGPHTDPTSLTILHQDQVGGLEVFVDNKWLAVRPRSEALVINIGDTFMALSNGRYKSCLHRALVNTYRERRSLVYFVCPREDKIVRPPDNLLCRNEERKYPDFTWSNLFEFTQKHYRADVATLQSFIEWQQCSNSNPSNF*

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