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Report for Sequence Feature Glyma06g16050

Feature Type:gene_model
Chromosome:Gm06
Start:12597700
stop:12603556
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64030AT Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr5:25624965-25628257 FORWARD LENGTH=829 SoyBaseE_val: 0ISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0008168GO-mf Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity SoyBaseN/AISS
KOG1973 KOG Chromatin remodeling protein, contains PHD Zn-finger JGI ISS
PTHR10108Panther METHYLTRANSFERASE JGI ISS
PTHR10108:SF55Panther PUTATIVE EARLY-RESPONSIVE TO DEHYDRATION STRESS PR JGI ISS
PF03141PFAM Putative methyltransferase JGI ISS
UniRef100_G7JC39UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ankyrin-like protein n=1 Tax=Medicago truncatula RepID=G7JC39_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KBK8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBK8_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g38870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g154800 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g16050.2   sequence type=transcript   gene model=Glyma06g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTCTTCCTCAAATATTTTATTTCGTCGGCGAATTCTTGAAGAAAAATAATTAAATTAAATAAGGCATCGTCATTTGGCAGCAGCGACCAGCTGGTATTTAAGTATCACTAAACTCGCCACAAGCTTTCACTTCACACTTCTCTTCTCTTCTCTTCTCTTCTGTCTCCATTGGACAGATAGCATTTTCCCCTTCCCAGACAGATCCAAGAACCACAGTGCTCTTTTTTGAGCCAACGGTGCTGATTCTTTCCCGCGGAATCTTGCTCGGCGTTGGGGTGTAAGTCATTTGTCAATTCCCTTGGACAAGATGGCTTTGGGGAAATATGCTAGGGTAGATGGTAGAAGATCGTCGAGCTGGTGTTCGACGGTGACTGTTGTCGTGTTTGTGGCTCTATGCTTGGTTGGGGTTTGGATGATGACATCATCTTCAGTTGTCCCTGTGCGTAATGGAGATGAGGCCCAGGAGAATAAGAACCAAGTGAAAGAACAAACAGAGCCTACAGAGGTGAAAGAAGCAGTGAGTGAGGTCAGCAATAGCAATATGCGGCAGTTTGAAGATAATCCAGGTGATTTGCCTGAGGATGCAACCAAAGGGGACAGCAATGTAGCCTCTGAAGACAACTCAAACTTGTCAGATAAACAAGAAGAGAAGTCGGAGGAAAATCCTGTAGAGAGGTCTTCTGACGATACAAAGTCGGAAGACGTGGAGGATAAGAAAACTGAGGAGGAAGGTTCTAATACAGAAAATGAATCAAACTCAGACTCTACAGAAAATAGCAAAGACAGTGATGAGACTTCCACTAAAGAATCTGATTCTGATGAGAATGAGAAGAAGTCTGATTCAGATGAAAGTGAAAAGCAATCTAATGACACTGATGAAACAACAGATACTAAGATAGAGGAGAAGGTGGAAGAAAGTGATAACAAGGAATCTGATGAAAACTCTAGTGAGAAGAATATAAATGATGATACCAAACAGAAGAGTTCAAAGGAGGTATACCCTTCTGGGGCTCAGTCTGAGCTTCAAGAAGAAAGTACAGCAGAAACTGGGTCTTGGTCAACTCAGGCAGCACAGTCGAAGAATGAAAAGGATTCTCAAGAGTCCTCCAAGCAGCCAACTGGATACAAGTGGAAGCTTTGTAATGTCACTGCTGGTCCTGATTTTATACCATGCCTTGATAACTGGAAAGCTATTAGGAGTCTCCAGAGTACTAAACACTATGAACATCGAGAAAGGCACTGTCCTGAAGAACCTCCTACCTGCCTTGTTCCTGTTCCTGAAGGTTATAAACGCCCAATTGAGTGGCCTAAGAGCAGAGAGAAGATATGGTATTACAATGTTCCACACACCAAGCTTGCTGAAGTTAAGGGCCACCAGAATTGGGTGAAAGTAACGGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAACATGGGGCACTTCATTACATTGACTTTATACAAGAGACTGTACCTGACATTGCTTGGGGAAAACGCACACGTGTTATACTAGATGTTGGATGTGGTGTTGCCAGCTTTGGAGGTTTTCTCTTTGATAGAGATGTACTTGCAATGTCGTTAGCACCAAAGGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGGATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGGGAAAGTATTTGATGTAGTCCATTGTGCACGATGTAGAGTTCCGTGGCATATAGAAGGTGGTAAACTTCTTTTGGAGCTAAATAGAGTATTGAGACCTGGAGGTTTTTTTGTATGGTCTGCTACTCCAATTTATCAGAAGCTTCCTGAAGATGTTGAAATATGGAAGGCCATGAAGGCACTAACAAAAGCCATGTGCTGGGAAGTTGTGTCGATCAGCAAGGATCCAGTAAATGGAGTAGGTGTAGCTGTATACAGGAAGCCAACTTCTAATGAGTGTTACGAGCAACGCTCAAAGAATGAGCCACCGCTGTGTCCAGACTCTGATGATCCTAATGCAGCATGGAACATTCAATTGCAAGCTTGCTTGCACAAAGCGCCAGTTAGTTCAAAGGAACGAGGCTCAAAATTGCCTGAGCTGTGGCCAGCCAGACTGATCAAAGTGCCTTATTGGTTGTCGAGTTCCCAAGTTGGAGTTTATGGAAAGCCAGCCCCTCAAGATTTCACTGCTGATTATGAACACTGGAAACGTGTAGTATCCAAGTCTTATCTAGACGGGATGGGAATTAAATGGTCAAATGTACGCAATGTCATGGATATGAGATCTATCTATGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTACAATAGACTCCCCAGATACTCTTCCTATTATTTATGAACGAGGTCTTTTTGGTATATATCATGATTGGTGTGAATCATTTAGCACCTATCCTAGGACCTATGATCTCCTCCATGCTGATCATTTGTTTTCAAAGCTTAAGAAAAGGTGCAATTTGGCTGCTGTAGTGGCTGAGGCTGATCGGATTCTTAGGCCTGAAGGAAAACTTATTGTTCGCGATACTGTTGAGATCATTGAAGAGCTTGAGAGCATGGCTAGGTCTATGCAGTGGAAGGTTCGCATGACTTACTCCAAGGATAAGGAGGGTTTGTTATGTGTGGAGAAGTCCAAGTGGCGACCTAAGGAGCAGGAAAAGCTCGAGTATGCTATTGCTTAAGCATGGAGATGAGATGCCAAAATTCTTGGTTTTTTGGCTACTCGAAATTCCTGTTTAACTGTACTTCCACTGAGTCATATGTATCATGTTAGTTAGGAATATCTATGTATTCTTTTTTCCTGTTGGGTATTAATTTTGATATCCTTTATTTATATTTATTAAATTGGTGACCTCTGTTGTAACATGGTGCCATAGCGTGAAGGAAATTTGATCACATTCTTGCAAATGTAGAGGCCATTGGGTTATATTTATAAGCGTGTAATAGTTGAGAATTTTGAATATTCACTTCACCAGAAATGGTAATATTAATCTATATATTATAAAGCTCTGACTTTATACTGGCTGATTTTACAG

>Glyma06g16050.1   sequence type=CDS   gene model=Glyma06g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGGGGAAATATGCTAGGGTAGATGGTAGAAGATCGTCGAGCTGGTGTTCGACGGTGACTGTTGTCGTGTTTGTGGCTCTATGCTTGGTTGGGGTTTGGATGATGACATCATCTTCAGTTGTCCCTGTGCGTAATGGAGATGAGGCCCAGGAGAATAAGAACCAAGTGAAAGAACAAACAGAGCCTACAGAGGTGAAAGAAGCAGTGAGTGAGGTCAGCAATAGCAATATGCGGCAGTTTGAAGATAATCCAGGTGATTTGCCTGAGGATGCAACCAAAGGGGACAGCAATGTAGCCTCTGAAGACAACTCAAACTTGTCAGATAAACAAGAAGAGAAGTCGGAGGAAAATCCTGTAGAGAGGTCTTCTGACGATACAAAGTCGGAAGACGTGGAGGATAAGAAAACTGAGGAGGAAGGTTCTAATACAGAAAATGAATCAAACTCAGACTCTACAGAAAATAGCAAAGACAGTGATGAGACTTCCACTAAAGAATCTGATTCTGATGAGAATGAGAAGAAGTCTGATTCAGATGAAAGTGAAAAGCAATCTAATGACACTGATGAAACAACAGATACTAAGATAGAGGAGAAGGTGGAAGAAAGTGATAACAAGGAATCTGATGAAAACTCTAGTGAGAAGAATATAAATGATGATACCAAACAGAAGAGTTCAAAGGAGGTATACCCTTCTGGGGCTCAGTCTGAGCTTCAAGAAGAAAGTACAGCAGAAACTGGGTCTTGGTCAACTCAGGCAGCACAGTCGAAGAATGAAAAGGATTCTCAAGAGTCCTCCAAGCAGCCAACTGGATACAAGTGGAAGCTTTGTAATGTCACTGCTGGTCCTGATTTTATACCATGCCTTGATAACTGGAAAGCTATTAGGAGTCTCCAGAGTACTAAACACTATGAACATCGAGAAAGGCACTGTCCTGAAGAACCTCCTACCTGCCTTGTTCCTGTTCCTGAAGGTTATAAACGCCCAATTGAGTGGCCTAAGAGCAGAGAGAAGATATGGTATTACAATGTTCCACACACCAAGCTTGCTGAAGTTAAGGGCCACCAGAATTGGGTGAAAGTAACGGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAACATGGGGCACTTCATTACATTGACTTTATACAAGAGACTGTACCTGACATTGCTTGGGGAAAACGCACACGTGTTATACTAGATGTTGGATGTGGTGTTGCCAGCTTTGGAGGTTTTCTCTTTGATAGAGATGTACTTGCAATGTCGTTAGCACCAAAGGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGGATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGGGAAAGTATTTGATGTAGTCCATTGTGCACGATGTAGAGTTCCGTGGCATATAGAAGGTGGTAAACTTCTTTTGGAGCTAAATAGAGTATTGAGACCTGGAGGTTTTTTTGTATGGTCTGCTACTCCAATTTATCAGAAGCTTCCTGAAGATGTTGAAATATGGAAGGCCATGAAGGCACTAACAAAAGCCATGTGCTGGGAAGTTGTGTCGATCAGCAAGGATCCAGTAAATGGAGTAGGTGTAGCTGTATACAGGAAGCCAACTTCTAATGAGTGTTACGAGCAACGCTCAAAGAATGAGCCACCGCTGTGTCCAGACTCTGATGATCCTAATGCAGCATGGAACATTCAATTGCAAGCTTGCTTGCACAAAGCGCCAGTTAGTTCAAAGGAACGAGGCTCAAAATTGCCTGAGCTGTGGCCAGCCAGACTGATCAAAGTGCCTTATTGGTTGTCGAGTTCCCAAGTTGGAGTTTATGGAAAGCCAGCCCCTCAAGATTTCACTGCTGATTATGAACACTGGAAACGTGTAGTATCCAAGTCTTATCTAGACGGGATGGGAATTAAATGGTCAAATGTACGCAATGTCATGGATATGAGATCTATCTATGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTACAATAGACTCCCCAGATACTCTTCCTATTATTTATGAACGAGGTCTTTTTGGTATATATCATGATTGGTGTGAATCATTTAGCACCTATCCTAGGACCTATGATCTCCTCCATGCTGATCATTTGTTTTCAAAGCTTAAGAAAAGGTGCAATTTGGCTGCTGTAGTGGCTGAGGCTGATCGGATTCTTAGGCCTGAAGGAAAACTTATTGTTCGCGATACTGTTGAGATCATTGAAGAGCTTGAGAGCATGGCTAGGTCTATGCAGTGGAAGGTTCGCATGACTTACTCCAAGGATAAGGAGGGTTTGTTATGTGTGGAGAAGTCCAAGTGGCGACCTAAGGAGCAGGAAAAGCTCGAGTATGCTATTGCTTAA

>Glyma06g16050.2   sequence type=CDS   gene model=Glyma06g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTTGGGGAAATATGCTAGGGTAGATGGTAGAAGATCGTCGAGCTGGTGTTCGACGGTGACTGTTGTCGTGTTTGTGGCTCTATGCTTGGTTGGGGTTTGGATGATGACATCATCTTCAGTTGTCCCTGTGCGTAATGGAGATGAGGCCCAGGAGAATAAGAACCAAGTGAAAGAACAAACAGAGCCTACAGAGGTGAAAGAAGCAGTGAGTGAGGTCAGCAATAGCAATATGCGGCAGTTTGAAGATAATCCAGGTGATTTGCCTGAGGATGCAACCAAAGGGGACAGCAATGTAGCCTCTGAAGACAACTCAAACTTGTCAGATAAACAAGAAGAGAAGTCGGAGGAAAATCCTGTAGAGAGGTCTTCTGACGATACAAAGTCGGAAGACGTGGAGGATAAGAAAACTGAGGAGGAAGGTTCTAATACAGAAAATGAATCAAACTCAGACTCTACAGAAAATAGCAAAGACAGTGATGAGACTTCCACTAAAGAATCTGATTCTGATGAGAATGAGAAGAAGTCTGATTCAGATGAAAGTGAAAAGCAATCTAATGACACTGATGAAACAACAGATACTAAGATAGAGGAGAAGGTGGAAGAAAGTGATAACAAGGAATCTGATGAAAACTCTAGTGAGAAGAATATAAATGATGATACCAAACAGAAGAGTTCAAAGGAGGTATACCCTTCTGGGGCTCAGTCTGAGCTTCAAGAAGAAAGTACAGCAGAAACTGGGTCTTGGTCAACTCAGGCAGCACAGTCGAAGAATGAAAAGGATTCTCAAGAGTCCTCCAAGCAGCCAACTGGATACAAGTGGAAGCTTTGTAATGTCACTGCTGGTCCTGATTTTATACCATGCCTTGATAACTGGAAAGCTATTAGGAGTCTCCAGAGTACTAAACACTATGAACATCGAGAAAGGCACTGTCCTGAAGAACCTCCTACCTGCCTTGTTCCTGTTCCTGAAGGTTATAAACGCCCAATTGAGTGGCCTAAGAGCAGAGAGAAGATATGGTATTACAATGTTCCACACACCAAGCTTGCTGAAGTTAAGGGCCACCAGAATTGGGTGAAAGTAACGGGCGAGTACCTTACTTTTCCTGGTGGTGGAACCCAATTCAAACATGGGGCACTTCATTACATTGACTTTATACAAGAGACTGTACCTGACATTGCTTGGGGAAAACGCACACGTGTTATACTAGATGTTGGATGTGGTGTTGCCAGCTTTGGAGGTTTTCTCTTTGATAGAGATGTACTTGCAATGTCGTTAGCACCAAAGGATGAACATGAAGCTCAGGTACAATTTGCACTTGAAAGGGGGATTCCTGCTATATCTGCTGTGATGGGCACAAAGAGGCTTCCCTTCCCTGGGAAAGTATTTGATGTAGTCCATTGTGCACGATGTAGAGTTCCGTGGCATATAGAAGGTGGTAAACTTCTTTTGGAGCTAAATAGAGTATTGAGACCTGGAGGTTTTTTTGTATGGTCTGCTACTCCAATTTATCAGAAGCTTCCTGAAGATGTTGAAATATGGAAGGCCATGAAGGCACTAACAAAAGCCATGTGCTGGGAAGTTGTGTCGATCAGCAAGGATCCAGTAAATGGAGTAGGTGTAGCTGTATACAGGAAGCCAACTTCTAATGAGTGTTACGAGCAACGCTCAAAGAATGAGCCACCGCTGTGTCCAGACTCTGATGATCCTAATGCAGCATGGAACATTCAATTGCAAGCTTGCTTGCACAAAGCGCCAGTTAGTTCAAAGGAACGAGGCTCAAAATTGCCTGAGCTGTGGCCAGCCAGACTGATCAAAGTGCCTTATTGGTTGTCGAGTTCCCAAGTTGGAGTTTATGGAAAGCCAGCCCCTCAAGATTTCACTGCTGATTATGAACACTGGAAACGTGTAGTATCCAAGTCTTATCTAGACGGGATGGGAATTAAATGGTCAAATGTACGCAATGTCATGGATATGAGATCTATCTATGGAGGATTTGCTGCAGCTTTGAGAGATTTGAATGTTTGGGTCATGAATGTGGTTACAATAGACTCCCCAGATACTCTTCCTATTATTTATGAACGAGGTCTTTTTGGTATATATCATGATTGGTGTGAATCATTTAGCACCTATCCTAGGACCTATGATCTCCTCCATGCTGATCATTTGTTTTCAAAGCTTAAGAAAAGGTGCAATTTGGCTGCTGTAGTGGCTGAGGCTGATCGGATTCTTAGGCCTGAAGGAAAACTTATTGTTCGCGATACTGTTGAGATCATTGAAGAGCTTGAGAGCATGGCTAGGTCTATGCAGTGGAAGGTTCGCATGACTTACTCCAAGGATAAGGAGGGTTTGTTATGTGTGGAGAAGTCCAAGTGGCGACCTAAGGAGCAGGAAAAGCTCGAGTATGCTATTGCTTAA

>Glyma06g16050.1   sequence type=predicted peptide   gene model=Glyma06g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGKYARVDGRRSSSWCSTVTVVVFVALCLVGVWMMTSSSVVPVRNGDEAQENKNQVKEQTEPTEVKEAVSEVSNSNMRQFEDNPGDLPEDATKGDSNVASEDNSNLSDKQEEKSEENPVERSSDDTKSEDVEDKKTEEEGSNTENESNSDSTENSKDSDETSTKESDSDENEKKSDSDESEKQSNDTDETTDTKIEEKVEESDNKESDENSSEKNINDDTKQKSSKEVYPSGAQSELQEESTAETGSWSTQAAQSKNEKDSQESSKQPTGYKWKLCNVTAGPDFIPCLDNWKAIRSLQSTKHYEHRERHCPEEPPTCLVPVPEGYKRPIEWPKSREKIWYYNVPHTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETVPDIAWGKRTRVILDVGCGVASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWKAMKALTKAMCWEVVSISKDPVNGVGVAVYRKPTSNECYEQRSKNEPPLCPDSDDPNAAWNIQLQACLHKAPVSSKERGSKLPELWPARLIKVPYWLSSSQVGVYGKPAPQDFTADYEHWKRVVSKSYLDGMGIKWSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCNLAAVVAEADRILRPEGKLIVRDTVEIIEELESMARSMQWKVRMTYSKDKEGLLCVEKSKWRPKEQEKLEYAIA*

>Glyma06g16050.2   sequence type=predicted peptide   gene model=Glyma06g16050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALGKYARVDGRRSSSWCSTVTVVVFVALCLVGVWMMTSSSVVPVRNGDEAQENKNQVKEQTEPTEVKEAVSEVSNSNMRQFEDNPGDLPEDATKGDSNVASEDNSNLSDKQEEKSEENPVERSSDDTKSEDVEDKKTEEEGSNTENESNSDSTENSKDSDETSTKESDSDENEKKSDSDESEKQSNDTDETTDTKIEEKVEESDNKESDENSSEKNINDDTKQKSSKEVYPSGAQSELQEESTAETGSWSTQAAQSKNEKDSQESSKQPTGYKWKLCNVTAGPDFIPCLDNWKAIRSLQSTKHYEHRERHCPEEPPTCLVPVPEGYKRPIEWPKSREKIWYYNVPHTKLAEVKGHQNWVKVTGEYLTFPGGGTQFKHGALHYIDFIQETVPDIAWGKRTRVILDVGCGVASFGGFLFDRDVLAMSLAPKDEHEAQVQFALERGIPAISAVMGTKRLPFPGKVFDVVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPIYQKLPEDVEIWKAMKALTKAMCWEVVSISKDPVNGVGVAVYRKPTSNECYEQRSKNEPPLCPDSDDPNAAWNIQLQACLHKAPVSSKERGSKLPELWPARLIKVPYWLSSSQVGVYGKPAPQDFTADYEHWKRVVSKSYLDGMGIKWSNVRNVMDMRSIYGGFAAALRDLNVWVMNVVTIDSPDTLPIIYERGLFGIYHDWCESFSTYPRTYDLLHADHLFSKLKKRCNLAAVVAEADRILRPEGKLIVRDTVEIIEELESMARSMQWKVRMTYSKDKEGLLCVEKSKWRPKEQEKLEYAIA*







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