Report for Sequence Feature Glyma06g16010
Feature Type: gene_model
Chromosome: Gm06
Start: 12573384
stop: 12575246
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g16010
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G13610 AT
Annotation by Michelle Graham. TAIR10: ABC-2 type transporter family protein | chr2:5673827-5675776 REVERSE LENGTH=649
SoyBase E_val: 0 ISS
GO:0010103 GO-bp
Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0000166 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleotide binding
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
GO:0016887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity
SoyBase N/A ISS
GO:0017111 GO-mf
Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity
SoyBase N/A ISS
GO:0042626 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances
SoyBase N/A ISS
KOG0061
KOG
Transporter, ABC superfamily (Breast cancer resistance protein)
JGI ISS
PTHR19241 Panther
ATP-BINDING CASSETTE TRANSPORTER
JGI ISS
PTHR19241:SF101 Panther
JGI ISS
PF00005 PFAM
ABC transporter
JGI ISS
PF01061 PFAM
ABC-2 type transporter
JGI ISS
UniRef100_G7LE38 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter G family member n=1 Tax=Medicago truncatula RepID=G7LE38_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KBK4 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KBK4_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g16010
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g16010
Paralog Evidence Comments
Glyma04g38970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g16010 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g154500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g16010
Coding sequences of Glyma06g16010
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g16010.1 sequence type=CDS gene model=Glyma06g16010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAAGAAACAAGGGTGTGAGGTTGAGGCAATTGGCATCAACTACAAGATCCGTACAAAGACAACAGAGAAACCTTTTAAAATCTTCACCAAACTTCCACAATTGAATAGGGAAGAAGATGTTCATGAAGCAGAAGATGAACAAAGGTCATGCCGTGGAGTGAGGCATGTCCTCAAAGATGTGAATTGCATGGCCAAGCCATGGGAAATTCTGGCAATTGTTGGGCCAAGTGGAGCTGGAAAAACATCCCTTCTTGAGATCCTTGCTGGTAAAGCTAGTCCTCAAAGTGGTTCTATCTTGGTGAATCAAGAACCTGTGGATAAAGCTGAGTTCAAAAAATTTTCAGGGTATGTTACACAAAAGGATACCTTGTTTCCCTTACTTACAGTTGAAGAAACCATTATGTTTAGTGCAAAGTTAAGGCTAAATCTTCCTCGGGAGCAATTATTCTCCAGGGTCAAGTCACTGATTCTAGAGCTTGGTCTTGGCCATGTTGCTAGGACTAGAATTGGAGATGAAAGTGTCCGCGGCATATCCGGTGGTGAGAGGCGCCGTGTTTCCATTGGTGTTGAAGTCATACATGATCCAAAAGTGCTGATCTTGGATGAACCAACTTCAGGGCTTGACAGTAATTCAGCTTTGCAAATAATTGAAATGCTTAAAGTCATGGCTGACTCTAGGGGAAGAACTATAATCCTCAGTATCCACCAACCCAGGTACAGAATAGTGAAGTTGTTCAACTCATTACTGTTATTGGCCAATGGCAATGTGTTGCACCATGGCACTGTGGATTTAATGGGTGTGAATCTAAGACTAATGGGTTTAGAGCTTCCTCTTCATGTTAATGTAGTTGAGTTTGCCATTGATTCTATTGAGACCATTCAGCAACAACAAAAATTTCAGCATGGTGAGAGTAGAAGTGGTAAGTTTACTTTGCAACAGCTCTTTCAACAATCCAAGGTAATTGACATAGAAATCATTAGTTCGGGAATGGATATCACCTGTGGTTTTGCTAATTCTGGATTGAGAGAAACTATGATTCTCACTCATAGGTTCTCCAAAAACATCCTTCGCACAAAGGAACTCTTTGCTTGCAGGACAATTCAAATGCTGGTTTCTGGACTTGTTTTAGGCTCAGTCTTTTGTAATCTCAAGGATGGTCTAGTAGGAGCAGAAGAAAGAGTGGGTCTATTTGCTTTCATATTAACGTTTTTGTTGTCAAGCACCACCGAAGCTCTACCGATTTTTCTGCAAGAAAGGGAGATTCTAATGAAGGAGACCTCTAGTGGAAGCTACAGAGTTTCATCCTATGCTATTGCCAATGGCCTAGTTTACTTGCCATTTCTACTCATACTAGCCATTTTGTTCACAATGCCTTTGTACTGGCTCATTGGTCTCAACAGAAATTTCACAGCATTTTTGTACTTTTTGATGCAAATTTGGCTGATTCTTAACACTGCAAATTCGGTTGTGGTATGTTTCAGTGCACTGGTGCCTAATTTCATTGTTGGAAATTCGATGATCGCTGGTGTCATTGGTTCGTTTCTCTTGTTCTCTGGCTACTTCATATCAAAACATGAAATTCCAAGTTACTGGATTTTCATGCATTACATATCTCCATTTAAGTATCCCTTTGAAGGGTTCCTAATAAATGAGTTCTCCAACTCAAATAAGTGCTTGGAGTACTTGTTTGGGACATGTGTGGTGAGAGGAGCGGATGTACTTAAAGAAGCAAAGCTTGGAGGAGAGACTAGTAGATGGAAGAATGTTGGGGTGATGGTGTGCTTTATCTTGGTTTACAGGTTCATTTCTTATGTAATTCTTAGGTACAGATGTTCGCAAGGAGTTATCCTAAAAGTATGA
Predicted protein sequences of Glyma06g16010
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g16010.1 sequence type=predicted peptide gene model=Glyma06g16010 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MKKQGCEVEAIGINYKIRTKTTEKPFKIFTKLPQLNREEDVHEAEDEQRSCRGVRHVLKDVNCMAKPWEILAIVGPSGAGKTSLLEILAGKASPQSGSILVNQEPVDKAEFKKFSGYVTQKDTLFPLLTVEETIMFSAKLRLNLPREQLFSRVKSLILELGLGHVARTRIGDESVRGISGGERRRVSIGVEVIHDPKVLILDEPTSGLDSNSALQIIEMLKVMADSRGRTIILSIHQPRYRIVKLFNSLLLLANGNVLHHGTVDLMGVNLRLMGLELPLHVNVVEFAIDSIETIQQQQKFQHGESRSGKFTLQQLFQQSKVIDIEIISSGMDITCGFANSGLRETMILTHRFSKNILRTKELFACRTIQMLVSGLVLGSVFCNLKDGLVGAEERVGLFAFILTFLLSSTTEALPIFLQEREILMKETSSGSYRVSSYAIANGLVYLPFLLILAILFTMPLYWLIGLNRNFTAFLYFLMQIWLILNTANSVVVCFSALVPNFIVGNSMIAGVIGSFLLFSGYFISKHEIPSYWIFMHYISPFKYPFEGFLINEFSNSNKCLEYLFGTCVVRGADVLKEAKLGGETSRWKNVGVMVCFILVYRFISYVILRYRCSQGVILKV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
