Glyma06g15990 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g15990

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12557718
stop:	12558996
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15990

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64530	AT	Annotation by Michelle Graham. TAIR10: xylem NAC domain 1 \| chr5:25795360-25796699 FORWARD LENGTH=187	SoyBase	E_val: 8.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0043067	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of programmed cell death	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_B2ZGR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: NAC domain protein (Fragment) n=1 Tax=Glycine max RepID=B2ZGR0_SOYBN	SoyBase	E_val: 5.00E-115	ISS
UniRef100_I1KBK3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBK3_SOYBN	SoyBase	E_val: 5.00E-150	ISS

Expression Patterns of Glyma06g15990

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15990

Paralog	Evidence	Comments
Glyma04g38990	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15990 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g154400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15990

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15990

Limit To All Plant Sequences

>Glyma06g15990.1   sequence type=CDS   gene model=Glyma06g15990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGATGAAAGCATCAACCTTCCTCCTGGGTTTTTGTTCTCTCCAACTGATGAAGAACTTGTTGTTCACTTTCTTTATTGTAAGGCTTCTCTTATTCCTTATCATCCCAACATCATTCCCGATCTCGATCCGTCTCAGCTTGATGATCCTTGGGAACTAAATGGTAAGGCGTTGTTAAGTGGAAATCAGTACTATTTCTTTACCAAAGTGAATGAAAACAGAACCACTGAAAATGGGTATTGGAAGGACACAGGTGTCACGAAACCTATATTGTCAACCTTTGATAAGGAAGTGGGAATGAAGAAGTACTTGGTATTCCACATTGGTGAAGCTCCACAGGGCACTGAAACCAGTTGGGTAATGCAAGAATATCATATATGTTCCTCTGAGTTTGACACTGCCTCATATCGAAGTGTTAGGAGAAGAAGAAAACATGATCAAAGTTGGAGCAAGTGCGTTTTGTGCAGAGTCTATGAGAAGATCAGGTCTCAACAAAGTGTAGACTGCTATAGGGATGATGATGATGATGGCAGTGGATCAGAGCTTTCGTGGCTAGACGAAGTTTATCTGTCGTTGGATGATGATCTGAAAGAGATTGGCATGCCTATTTAG

Predicted protein sequences of Glyma06g15990

Limit To All Plant Sequences

>Glyma06g15990.1   sequence type=predicted peptide   gene model=Glyma06g15990   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDESINLPPGFLFSPTDEELVVHFLYCKASLIPYHPNIIPDLDPSQLDDPWELNGKALLSGNQYYFFTKVNENRTTENGYWKDTGVTKPILSTFDKEVGMKKYLVFHIGEAPQGTETSWVMQEYHICSSEFDTASYRSVRRRRKHDQSWSKCVLCRVYEKIRSQQSVDCYRDDDDDGSGSELSWLDEVYLSLDDDLKEIGMPI*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain