SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g15930

Feature Type:gene_model
Chromosome:Gm06
Start:12516557
stop:12517688
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g15930
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G61750AT Annotation by Michelle Graham. TAIR10: RmlC-like cupins superfamily protein | chr5:24812804-24813436 REVERSE LENGTH=210 SoyBaseE_val: 2.00E-55ISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0030145GO-mf Annotation by Michelle Graham. GO Molecular Function: manganese ion binding SoyBaseN/AISS
GO:0045735GO-mf Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity SoyBaseN/AISS
PF00190PFAM Cupin JGI ISS
UniRef100_G7JBL3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Germin-like protein n=1 Tax=Medicago truncatula RepID=G7JBL3_MEDTR SoyBaseE_val: 2.00E-93ISS
UniRef100_I1KBJ7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBJ7_SOYBN SoyBaseE_val: 1.00E-164ISS

Expression Patterns of Glyma06g15930
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15930
ParalogEvidenceComments
Glyma04g39040 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15930 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g153800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g15930
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g15930
>Glyma06g15930.1   sequence type=CDS   gene model=Glyma06g15930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGATAAAGTCTCATTTTTCCTTCTCCCTAATGTTTCTTATAGGCATAGCCATTAGCCACACACATGTTTCTTTAGCAGAATGTGACAATGTGAAGGACTATTGCCCTACAATTCCTCCCCAAAAGCAAACCATATTCCTCAATGGCTTCCCCTGCGAGAACCCAAATAACACAATTGCACATGATTTCAAGAGCATGGAACTAAGCAAGCCAGGTTCAAGAGACAAGTTAGGTTCATTAGTTAAAATTGTTACAGCTTCCAAGTTTCCGGGGCTCAACGCACTCGGCCTCGCGATTGGTAGAAGTGACATTGAAGTGGATGGCCTTGTGAACCTCCACAATCATCCAAGAGCCACTGAGATGATCTATGTCAGCCAAGGTGATGTAGTCGCTGCGTTTCTTGACACTCGGAACCAGCTCTTCCAGAAGATTCTCAGGGCTGGTGATGTGTTTGTGATCCCCAAAGGGTTGTTTCACTTCTTGCTGAATCGTGGTGCACAAGTTGCAACTGTGTTCTCTGTGTTTAACAGCCAAAATCCTGGGTCAGGACCACTCACTTCCATACCTTCTGACACGTTGGAATCGGTTCAGAAGATCAAGAGGAAGGTTGTCTCACTTTCTGAGTCAGAACTTGATGGTGTTAGTGATTTGACTTCTGCAGTGTTGGATATCATTTACAGTTAA
Predicted protein sequences of Glyma06g15930
>Glyma06g15930.1   sequence type=predicted peptide   gene model=Glyma06g15930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKIKSHFSFSLMFLIGIAISHTHVSLAECDNVKDYCPTIPPQKQTIFLNGFPCENPNNTIAHDFKSMELSKPGSRDKLGSLVKIVTASKFPGLNALGLAIGRSDIEVDGLVNLHNHPRATEMIYVSQGDVVAAFLDTRNQLFQKILRAGDVFVIPKGLFHFLLNRGAQVATVFSVFNSQNPGSGPLTSIPSDTLESVQKIKRKVVSLSESELDGVSDLTSAVLDIIYS*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo