SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33460 | AT | Annotation by Michelle Graham. TAIR10: ABC transporter family protein | chr4:16098325-16100113 REVERSE LENGTH=271 | SoyBase | E_val: 7.00E-124 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG2355 | KOG | Predicted ABC-type transport, ATPase component/CCR4 associated factor | JGI | ISS | |
| PTHR24220 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24220:SF80 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00005 | PFAM | ABC transporter | JGI | ISS | |
| UniRef100_G7JBL0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter I family member n=1 Tax=Medicago truncatula RepID=G7JBL0_MEDTR | SoyBase | E_val: 1.00E-164 | ISS |
| UniRef100_I1KBJ4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBJ4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g15900 not represented in the dataset |
Glyma06g15900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g39091 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g153500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g15900.2 sequence type=transcript gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTATTAGTTTTCGTGATTTTCTTTATTCATTTCACTTTTTAGTTAGGCATTTTCTCGAACAGTTTTCGTTCAAGCTTTGGATTTTTATTGTTTTGATTTTTTCAGTGGAAATAGGCCTGAGAATTTTGCGATTGAAGGGCGTAATTTGAAATTCTCATTCACGACGAGGCAAACACAGGATGTACCGGTTCTTAAGGATTGTTCGATTCGCATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACTCCAACTTCAGGAACAGTGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGCTTGGAAGAACTGGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTAGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGGCAATCTGCCTATATAACCCAGATTAATTCTTAAACAAGTCTTTGTTTCTGAGGATATATACTACTCTTTGTTTAAGAGTAGTAAACTTTTGAGCAAACTATATTCATCTTGTAAATTAATTATAAAAGGTTGTTTTCTGAATTTGGATTTGCTGTAATTGGGAACCCACATTCGATCTTCATGGCTAAAATATCAATCTGCAGTCGGTGAATTTAGATTTAATTTAAGACACGATACTCCGTGGACGAAAATTGAACAGGACACGATGAGTCTCAATTGCAGCATATCTGAATTCGTGTTTTTTTTATTCCCATTCAAGTCATTTACCTCCCGTCAATTCATGGATATCCGTTGTAATTTTTCCATCGGAGTGTTTTTATTTCCTCTAAAAGGTTGAAACAAGGGGAGATTTTAAGCAAACTTAAGG >Glyma06g15900.3 sequence type=transcript gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAGTTCTTATTGCCAATGCCACTTTCTTAAAGTTTTGAGGCATTATCTCAATGTTTGCAGTTCAGACACAACTATTGTGATAAAAAAAATTCACAAAATATGAAAGTAAAAAACCTGAGTTTGTTATCAATCTATAGTCACCAGAAAATTTCTACTGAAAATTTACAGCCTGACCCCATATGATGTATTGTATACAATCGGACTGTCAACTGTGTAGCCTTATATTTGTTGCAGGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGCTTGGAAGAACTGGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTAGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGGCAATCTGCCTATATAACCCAGATTAATTCTTAAACAAGTCTTTGTTTCTGAGGATATATACTACTCTTTGTTTAAGAGTAGTAAACTTTTGAGCAAACTATATTCATCTTGTAAATTAATTATAAAAGGTTGTTTTCTGAATTTGGATTTGCTGTAATTGGGAACCCACATTCGATCTTCATGGCTAAAATATCAATCTGCAGTCGGTGAATTTAGATTTAATTTAAGACACGATACTCCGTGGACGAAAATTGAACAGGACACGATGAGTCTCAATTGCAGCATATCTGAATTCGTGTTTTTTTTATTCCC
>Glyma06g15900.1 sequence type=CDS gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATCTCTCTTATCTTACTCGCTTCCCCGAGCGTCTCGTTGCTCCTCTTTATGCCACACTTCCCACTACAGCTACTACTAGTGGAAATAGGCCTGAGAATTTTGCGATTGAAGGGCGTAATTTGAAATTCTCATTCACGACGAGGCAAACACAGGATGTACCGGTTCTTAAGGATTGTTCGATTCGCATTCCTTGCGGGCAGTTTTGGATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACTCCAACTTCAGGAACAGTGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGCTTGGAAGAACTGGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTAGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGGCAATCTGCCTATATAACCCAGATTAATTCTTAA >Glyma06g15900.2 sequence type=CDS gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTTCTTGGACCCAATGGGTGTGGAAAATCTACCCTCTTGAAGATTTTGGCTGGTCTCTTGACTCCAACTTCAGGAACAGTGTACGTGAATGGGCCTAAAAGTTTTGTTTTCCAAAATCCAGATCATCAGGTGGTAATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGCTTGGAAGAACTGGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTAGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGGCAATCTGCCTATATAACCCAGATTAATTCTTAA >Glyma06g15900.3 sequence type=CDS gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTACGGTAGATTCTGATGTTGCATTTGGTCTTGGTAAGATCAATTTGGCTCACGATGAAGTCAGATCTAGGGTGTCAAGAGCTTTGCATGCTGTAGGCCTGTCTGACTACATGAAGAGATCTGTCCAAACTCTGAGTGGTGGTCAGAAGCAGAGGGTTGCCATTGCTGGTGCTCTTGCTGAAGCTTGTAAAGTTCTGTTGTTGGATGAGCTCACAACATTCTTAGATGAAGCTGACCAGGTTGGGGTCATCAAAGCTGTTAGGAACTCAGTGGATACCTCTGCAGAAGTTACAGCATTATGGGTCACCCATCGCTTGGAAGAACTGGAGTATGCAGATGGTGCCATCTACATGGAGGATGGGAAAGTAGTCATGCATGGAGATGCCGCTAGCATTAGGAGTTTCATTGAAGCCAGGCAATCTGCCTATATAACCCAGATTAATTCTTAA
>Glyma06g15900.1 sequence type=predicted peptide gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNLSYLTRFPERLVAPLYATLPTTATTSGNRPENFAIEGRNLKFSFTTRQTQDVPVLKDCSIRIPCGQFWMLLGPNGCGKSTLLKILAGLLTPTSGTVYVNGPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLAHDEVRSRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDEADQVGVIKAVRNSVDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYITQINS* >Glyma06g15900.2 sequence type=predicted peptide gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLLGPNGCGKSTLLKILAGLLTPTSGTVYVNGPKSFVFQNPDHQVVMPTVDSDVAFGLGKINLAHDEVRSRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDEADQVGVIKAVRNSVDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYITQINS* >Glyma06g15900.3 sequence type=predicted peptide gene model=Glyma06g15900 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPTVDSDVAFGLGKINLAHDEVRSRVSRALHAVGLSDYMKRSVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDEADQVGVIKAVRNSVDTSAEVTALWVTHRLEELEYADGAIYMEDGKVVMHGDAASIRSFIEARQSAYITQINS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
