Glyma06g15880 - SoyBase

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Report for Sequence Feature Glyma06g15880

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12496879
stop:	12500094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15880

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19025	AT	Annotation by Michelle Graham. TAIR10: DNA repair metallo-beta-lactamase family protein \| chr1:6568920-6570800 FORWARD LENGTH=549	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG1361	KOG	Predicted hydrolase involved in interstrand cross-link repair	JGI		ISS
PTHR23240	Panther	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED	JGI		ISS
PTHR23240:SF1	Panther	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1	JGI		ISS
PF07522	PFAM	DNA repair metallo-beta-lactamase	JGI		ISS
UniRef100_G7JBK3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA cross-link repair 1B protein n=1 Tax=Medicago truncatula RepID=G7JBK3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBJ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBJ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15880

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g15880 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g153300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15880

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g15880

Limit To All Plant Sequences

>Glyma06g15880.2   sequence type=transcript   gene model=Glyma06g15880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGAAGCCTCCCGATATGGAACAAAGCCCTCTTCTTGCTCCGAAATCACGTTTAGGTAAAGAGTGAGAGAAGAGAAGATGCCGATCGAAATGCCCAAGGGATTGCCCTTCTCGGTGGACACATGGACTCCTTCGTCGTCCAAGAGGCACTGTTTCCTCACGCACGCTCACAAAGACCATTCCTCTTCCATCACTTCCCACTCTTCATACCCAATTTACTCTACCAATCTCACCAAAACCATTCTCCTTCAACAATATCCACAGCTAGATGCTTCCTTGTTTCTCAACATAGAGCTTGGTCAATCCTTGGTCATCCATGACCCCGCCGCCGCCCCATTCACCGTCTCCGCTTTTGACGCCAATCACTGCCCCGGTTATTAATTGTATATGGAAGCATCCTGATGCACAGACAGTGTATCTAACCTGCAACATGCTCGGTCAGGAAGAGATCCTTGTTAATGTGTCCGAAACATTTGGGGCCAAGATATACGTTGATAAAGCCAAGTATTCAGAATGTTTTGAGAATCTAGCACTTACTGTGCCTGAAATCCTCTGCGAAGATCCAGCTTCTCGTTTCCACTTGTTTGATGGATCTCGAAATCTATATGAAAGAGCTAAAGCAAAGCAGGTTGAGGCCAAAGAAACTCTCCAACCCGAGCCTCTCATTGTGCGCCCTTCTGCACAGTGGTATGCTTGTGAAGAAAAGTTCTCAGATATTGATAACACTAGAAAGAAGAGGATGGACGAAGCAGTTAAGGATCAGTTTGGTGTCTGGCATGTTTGTTACTCAATGCACTCATCCAAGGAAGAATTGGAATGGACACTTCAACTTCTTGCACCTAGGTGGGTTGTTTCAACAACCCCCAGCTGCAGGGCTATGAAACTGGATTATGTAAAGAAACACTTATTTAACTCTAAAGGAGCTCTCAACAACTCTATGTGGAAGCTTCTGGATATGACTCCGGAAACTTCTGATCATGTTGATACGTCAGAAAAATCTGTGAGCTGTAATCTTGTTCTTGAAGAAACCCCTCAGCCTTGTGCACAATCTAATGTGCTAACTAAATCACCTGTCAAACAGTTCACTGAGGCTAAAACACTAAAAGCACTGCTTCTTCATGACAAAAGCTTGCCTATCACGTTATTTGGAAGAGCAAGGTTCACTCTCCAAGATAGTGGCTTTTCACGAGTAGGATGTAACACATTGCCCGTTAATGTCCTTACCCAAACAGTTTCAAACGATGCACGACAAGAATTCTTGAAAGATGCTGAGGATGCTGAAGTGAAGGAGAGGTCACCAGAAAAAAAGAATGATTTACATCAAGTGGAGAAGAATCAGCAAACTGAGGTTCAGGAGGACACAAGAGTTCATAAGGGTGCCTCTTATCTAAATATCGGATCTTCAGGCTTGAGTGGAACTGTGAGAAAGTTGTACGGGTCAATGAATGTTCCTGTGCCTCAACCTCTTCCCTCCTTAAGGGATCTTATAAATTCCAGAAAACGTGTCAAGAGGGGAATTAAATATTAATCTTGCTTTTATTCAGTTATCTTCCATTTATCATGCTTGGAGATGTTCATGCACATATGATTCTTAAGATTTTACAAGAATTTTGCCTTGCTCTTTCCCGAACCACCATCTATGTCACGAGTGCTTGACAAGAAGCAGGAAGGTGGAAGGGAATAATCTGCAGGATTGTGCAAGTGTTGTCAAATCTGTTTCAATACTGTTATAGTTATTCTCTTTGAATAAGAGACGCTTCACTGTCATTATGGCAATTCAAACATTATTTTTAAAGTTTTAGCTGACAAGGAGCAGCAGAAGTCAGCAGAACTCAGTATATAGTGAAGAGATTCATTCAACTTTTCTGACATGGACATACATTCTATTGCCGCAACCAATAAAACATTCTGTTTCACTGATTCATTTTTCATGACGATGTGTAATTGCATATTGATTCTCATATCTCATCAACTTTCAGATGATTGCTCTGGCTGTGTACCAAAGGTTTAATCTTAGGAGCTGTTTACTTTAAGAAAACATGTTCTGCTTTTACTTTTAACTGTAAAAATGCTCCATTATTTTCATTTTGTGT

Coding sequences of Glyma06g15880

Limit To All Plant Sequences

>Glyma06g15880.1   sequence type=CDS   gene model=Glyma06g15880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGATCGAAATGCCCAAGGGATTGCCCTTCTCGGTGGACACATGGACTCCTTCGTCGTCCAAGAGGCACTGTTTCCTCACGCACGCTCACAAAGACCATTCCTCTTCCATCACTTCCCACTCTTCATACCCAATTTACTCTACCAATCTCACCAAAACCATTCTCCTTCAACAATATCCACAGCTAGATGCTTCCTTGTTTCTCAACATAGAGCTTGGTCAATCCTTGGTCATCCATGACCCCGCCGCCGCCCCATTCACCGTCTCCGCTTTTGACGCCAATCACTGCCCCGGGGCGGTGATGTTCTTGTTTGAAGGCAAATTTGGTAATATTCTGCACACGGGAGATTGCAGGCTCACTCCTGAGTGTTTGCTCAACTTACCTGACAAGTATGTTGGGAGGAAAGGGAAAGAGCCTCGCTGCCCTCTTGATTGTGTTTTCTTAGACTGCACTTTTGGCAATTTCTCTCAGGGGATGCCTAGCAAACATTCTGCTATTCAACAGGTTATTAATTGTATATGGAAGCATCCTGATGCACAGACAGTGTATCTAACCTGCAACATGCTCGGTCAGGAAGAGATCCTTGTTAATGTGTCCGAAACATTTGGGGCCAAGATATACGTTGATAAAGCCAAGTATTCAGAATGTTTTGAGAATCTAGCACTTACTGTGCCTGAAATCCTCTGCGAAGATCCAGCTTCTCGTTTCCACTTGTTTGATGGATCTCGAAATCTATATGAAAGAGCTAAAGCAAAGCAGGTTGAGGCCAAAGAAACTCTCCAACCCGAGCCTCTCATTGTGCGCCCTTCTGCACAGTGGTATGCTTGTGAAGAAAAGTTCTCAGATATTGATAACACTAGAAAGAAGAGGATGGACGAAGCAGTTAAGGATCAGTTTGGTGTCTGGCATGTTTGTTACTCAATGCACTCATCCAAGGAAGAATTGGAATGGACACTTCAACTTCTTGCACCTAGGTGGGTTGTTTCAACAACCCCCAGCTGCAGGGCTATGAAACTGGATTATGTAAAGAAACACTTATTTAACTCTAAAGGAGCTCTCAACAACTCTATGTGGAAGCTTCTGGATATGACTCCGGAAACTTCTGATCATGTTGATACGTCAGAAAAATCTGTGAGCTGTAATCTTGTTCTTGAAGAAACCCCTCAGCCTTGTGCACAATCTAATGTGCTAACTAAATCACCTGTCAAACAGTTCACTGAGGCTAAAACACTAAAAGCACTGCTTCTTCATGACAAAAGCTTGCCTATCACGTTATTTGGAAGAGCAAGGTTCACTCTCCAAGATAGTGGCTTTTCACGAGTAGGATGTAACACATTGCCCGTTAATGTCCTTACCCAAACAGTTTCAAACGATGCACGACAAGAATTCTTGAAAGATGCTGAGGATGCTGAAGTGAAGGAGAGGTCACCAGAAAAAAAGAATGATTTACATCAAGTGGAGAAGAATCAGCAAACTGAGGTTCAGGAGGACACAAGAGTTCATAAGGGTGCCTCTTATCTAAATATCGGATCTTCAGGCTTGAGTGGAACTGTGAGAAAGTTGTACGGGTCAATGAATGTTCCTGTGCCTCAACCTCTTCCCTCCTTAAGGGATCTTATAAATTCCAGAAAACGTGTCAAGAGGGGAATTAAATATTAA

>Glyma06g15880.2   sequence type=CDS   gene model=Glyma06g15880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACCCCGCCGCCGCCCCATTCACCGTCTCCGCTTTTGACGCCAATCACTGCCCCGGTTATTAATTGTATATGGAAGCATCCTGATGCACAGACAGTGTATCTAACCTGCAACATGCTCGGTCAGGAAGAGATCCTTGTTAATGTGTCCGAAACATTTGGGGCCAAGATATACGTTGATAAAGCCAAGTATTCAGAATGTTTTGAGAATCTAGCACTTACTGTGCCTGAAATCCTCTGCGAAGATCCAGCTTCTCGTTTCCACTTGTTTGATGGATCTCGAAATCTATATGAAAGAGCTAAAGCAAAGCAGGTTGAGGCCAAAGAAACTCTCCAACCCGAGCCTCTCATTGTGCGCCCTTCTGCACAGTGGTATGCTTGTGAAGAAAAGTTCTCAGATATTGATAACACTAGAAAGAAGAGGATGGACGAAGCAGTTAAGGATCAGTTTGGTGTCTGGCATGTTTGTTACTCAATGCACTCATCCAAGGAAGAATTGGAATGGACACTTCAACTTCTTGCACCTAGGTGGGTTGTTTCAACAACCCCCAGCTGCAGGGCTATGAAACTGGATTATGTAAAGAAACACTTATTTAACTCTAAAGGAGCTCTCAACAACTCTATGTGGAAGCTTCTGGATATGACTCCGGAAACTTCTGATCATGTTGATACGTCAGAAAAATCTGTGAGCTGTAATCTTGTTCTTGAAGAAACCCCTCAGCCTTGTGCACAATCTAATGTGCTAACTAAATCACCTGTCAAACAGTTCACTGAGGCTAAAACACTAAAAGCACTGCTTCTTCATGACAAAAGCTTGCCTATCACGTTATTTGGAAGAGCAAGGTTCACTCTCCAAGATAGTGGCTTTTCACGAGTAGGATGTAACACATTGCCCGTTAATGTCCTTACCCAAACAGTTTCAAACGATGCACGACAAGAATTCTTGAAAGATGCTGAGGATGCTGAAGTGAAGGAGAGGTCACCAGAAAAAAAGAATGATTTACATCAAGTGGAGAAGAATCAGCAAACTGAGGTTCAGGAGGACACAAGAGTTCATAAGGGTGCCTCTTATCTAAATATCGGATCTTCAGGCTTGAGTGGAACTGTGAGAAAGTTGTACGGGTCAATGAATGTTCCTGTGCCTCAACCTCTTCCCTCCTTAAGGGATCTTATAAATTCCAGAAAACGTGTCAAGAGGGGAATTAAATATTAA

Predicted protein sequences of Glyma06g15880

Limit To All Plant Sequences

>Glyma06g15880.1   sequence type=predicted peptide   gene model=Glyma06g15880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPIEMPKGLPFSVDTWTPSSSKRHCFLTHAHKDHSSSITSHSSYPIYSTNLTKTILLQQYPQLDASLFLNIELGQSLVIHDPAAAPFTVSAFDANHCPGAVMFLFEGKFGNILHTGDCRLTPECLLNLPDKYVGRKGKEPRCPLDCVFLDCTFGNFSQGMPSKHSAIQQVINCIWKHPDAQTVYLTCNMLGQEEILVNVSETFGAKIYVDKAKYSECFENLALTVPEILCEDPASRFHLFDGSRNLYERAKAKQVEAKETLQPEPLIVRPSAQWYACEEKFSDIDNTRKKRMDEAVKDQFGVWHVCYSMHSSKEELEWTLQLLAPRWVVSTTPSCRAMKLDYVKKHLFNSKGALNNSMWKLLDMTPETSDHVDTSEKSVSCNLVLEETPQPCAQSNVLTKSPVKQFTEAKTLKALLLHDKSLPITLFGRARFTLQDSGFSRVGCNTLPVNVLTQTVSNDARQEFLKDAEDAEVKERSPEKKNDLHQVEKNQQTEVQEDTRVHKGASYLNIGSSGLSGTVRKLYGSMNVPVPQPLPSLRDLINSRKRVKRGIKY*

>Glyma06g15880.2   sequence type=predicted peptide   gene model=Glyma06g15880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPPPPHSPSPLLTPITAPVINCIWKHPDAQTVYLTCNMLGQEEILVNVSETFGAKIYVDKAKYSECFENLALTVPEILCEDPASRFHLFDGSRNLYERAKAKQVEAKETLQPEPLIVRPSAQWYACEEKFSDIDNTRKKRMDEAVKDQFGVWHVCYSMHSSKEELEWTLQLLAPRWVVSTTPSCRAMKLDYVKKHLFNSKGALNNSMWKLLDMTPETSDHVDTSEKSVSCNLVLEETPQPCAQSNVLTKSPVKQFTEAKTLKALLLHDKSLPITLFGRARFTLQDSGFSRVGCNTLPVNVLTQTVSNDARQEFLKDAEDAEVKERSPEKKNDLHQVEKNQQTEVQEDTRVHKGASYLNIGSSGLSGTVRKLYGSMNVPVPQPLPSLRDLINSRKRVKRGIKY*

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